Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   H4994_RS03085 Genome accession   NZ_CP059965
Coordinates   580978..581493 (-) Length   171 a.a.
NCBI ID   WP_057044125.1    Uniprot ID   -
Organism   Campylobacter jejuni strain C219     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 575978..586493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4994_RS03045 (H4994_03045) - 576119..576223 (+) 105 Protein_588 winged helix-turn-helix transcriptional regulator -
  H4994_RS03050 (H4994_03050) arsP 576333..577280 (+) 948 WP_057030945.1 organoarsenical efflux permease ArsP -
  H4994_RS03055 (H4994_03055) - 577290..577607 (+) 318 WP_002858914.1 metalloregulator ArsR/SmtB family transcription factor -
  H4994_RS03060 (H4994_03060) - 577604..578026 (+) 423 WP_002787630.1 low molecular weight phosphatase family protein -
  H4994_RS03065 (H4994_03065) acr3 578020..579063 (+) 1044 WP_182101480.1 arsenite efflux transporter Acr3 -
  H4994_RS03070 (H4994_03070) - 579058..579486 (-) 429 Protein_593 MerR family transcriptional regulator -
  H4994_RS03075 (H4994_03075) - 579598..580557 (+) 960 WP_182577351.1 cache domain-containing protein -
  H4994_RS03080 (H4994_03080) - 580538..580978 (-) 441 Protein_595 DUF2920 family protein -
  H4994_RS03085 (H4994_03085) ctsG 580978..581493 (-) 516 WP_057044125.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  H4994_RS03090 (H4994_03090) tsaD 581494..582501 (-) 1008 WP_057044126.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  H4994_RS03095 (H4994_03095) - 582498..583892 (-) 1395 WP_057044127.1 M99 family carboxypeptidase catalytic domain-containing protein -
  H4994_RS03100 (H4994_03100) dxr 583894..584964 (-) 1071 WP_002859634.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  H4994_RS03105 (H4994_03105) cdsA 584961..585686 (-) 726 WP_002859635.1 phosphatidate cytidylyltransferase -
  H4994_RS03110 (H4994_03110) - 585695..586033 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18677.53 Da        Isoelectric Point: 6.4682

>NTDB_id=472788 H4994_RS03085 WP_057044125.1 580978..581493(-) (ctsG) [Campylobacter jejuni strain C219]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLLFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSNNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=472788 H4994_RS03085 WP_057044125.1 580978..581493(-) (ctsG) [Campylobacter jejuni strain C219]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATTAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTCTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAATAATAAAGCTTGTGTGATCTTAAGCAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.982

100

0.93