Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   H5A01_RS01020 Genome accession   NZ_CP059964
Coordinates   206087..206602 (+) Length   171 a.a.
NCBI ID   WP_060809752.1    Uniprot ID   -
Organism   Campylobacter jejuni strain C1922C72     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 201087..211602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5A01_RS00995 (H5A01_00995) - 201547..201885 (+) 339 WP_136696331.1 hypothetical protein -
  H5A01_RS01000 (H5A01_01000) cdsA 201894..202619 (+) 726 WP_002867314.1 phosphatidate cytidylyltransferase -
  H5A01_RS01005 (H5A01_01005) dxr 202616..203686 (+) 1071 WP_182263834.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  H5A01_RS01010 (H5A01_01010) - 203688..205082 (+) 1395 WP_182263833.1 M99 family carboxypeptidase catalytic domain-containing protein -
  H5A01_RS01015 (H5A01_01015) tsaD 205079..206086 (+) 1008 WP_032587648.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  H5A01_RS01020 (H5A01_01020) ctsG 206087..206602 (+) 516 WP_060809752.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  H5A01_RS01025 (H5A01_01025) - 206602..207260 (+) 659 Protein_203 DUF2920 family protein -
  H5A01_RS01030 (H5A01_01030) - 207251..207829 (+) 579 Protein_204 toprim domain-containing protein -
  H5A01_RS01035 (H5A01_01035) - 207950..208645 (+) 696 WP_002852254.1 chemotaxis protein -
  H5A01_RS01040 (H5A01_01040) - 208642..209895 (+) 1254 WP_052794043.1 peptidase U32 family protein -
  H5A01_RS01045 (H5A01_01045) purE 209896..210390 (+) 495 WP_002861384.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  H5A01_RS01050 (H5A01_01050) - 210400..210936 (+) 537 WP_002856824.1 DUF3972 domain-containing protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18680.53 Da        Isoelectric Point: 6.4682

>NTDB_id=472757 H5A01_RS01020 WP_060809752.1 206087..206602(+) (ctsG) [Campylobacter jejuni strain C1922C72]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGTKEVNFRVGDDKECLKLLFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=472757 H5A01_RS01020 WP_060809752.1 206087..206602(+) (ctsG) [Campylobacter jejuni strain C1922C72]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATCGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATTAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTAGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTCTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATCGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942