Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   R2866_RS07235 Genome accession   NC_017451
Coordinates   1481650..1482333 (-) Length   227 a.a.
NCBI ID   WP_005648030.1    Uniprot ID   -
Organism   Haemophilus influenzae R2866     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1476650..1487333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2866_RS07220 (R2866_1439) nrdR 1477440..1477889 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  R2866_RS07225 (R2866_1440) recC 1477944..1481324 (-) 3381 WP_005666025.1 exodeoxyribonuclease V subunit gamma -
  R2866_RS07230 (R2866_1441) comQ 1481370..1481657 (-) 288 WP_005648029.1 DUF5374 domain-containing protein Machinery gene
  R2866_RS07235 (R2866_1442) comP 1481650..1482333 (-) 684 WP_005648030.1 DUF2572 family protein Machinery gene
  R2866_RS07240 (R2866_1443) comO 1482348..1483064 (-) 717 WP_005648032.1 type II secretion system protein J Machinery gene
  R2866_RS07245 (R2866_1444) comN 1483064..1483576 (-) 513 WP_005648034.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  R2866_RS07250 (R2866_1445) suhB 1483776..1484579 (+) 804 WP_005648036.1 inositol-1-monophosphatase -
  R2866_RS07255 (R2866_1446) nrfE 1484688..1486595 (+) 1908 WP_005666026.1 heme lyase NrfEFG subunit NrfE -
  R2866_RS07260 (R2866_1447) - 1486595..1487125 (+) 531 WP_005666027.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25406.29 Da        Isoelectric Point: 9.5163

>NTDB_id=47271 R2866_RS07235 WP_005648030.1 1481650..1482333(-) (comP) [Haemophilus influenzae R2866]
MTIQKGIITLTILIFISGLLTVILLLDDSHLSFFRAQQNQRKHYVERTLQLQKMTATKKQTACLDLPLNNNESVKQISIA
LEGSTDAIQYFLWCERMSLFKKSPKKGDNQGALKDFVSGEKLAYFRPHFSSPPRILNANKMPKLYWFSDSQAEVEINGTV
SAVLIAEGDLKLTGKGRISGAVITSGNLTLDGVTLAYGKKTVVALVQQYSQWQLAEKSWSDFNVQDE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=47271 R2866_RS07235 WP_005648030.1 1481650..1482333(-) (comP) [Haemophilus influenzae R2866]
ATGACAATACAAAAAGGCATTATCACGCTGACTATTCTGATTTTTATTTCAGGTTTATTAACCGTAATCTTATTGTTGGA
TGACAGCCATTTAAGTTTTTTTCGTGCGCAACAAAATCAACGAAAACACTATGTGGAAAGAACATTACAACTGCAAAAAA
TGACCGCGACGAAAAAACAAACTGCCTGCCTTGATTTACCCTTAAATAATAATGAAAGTGTGAAGCAAATCAGCATCGCC
CTTGAGGGTTCCACCGATGCAATTCAATATTTTCTTTGGTGTGAAAGAATGAGCCTATTTAAAAAATCGCCTAAAAAGGG
AGATAATCAAGGTGCATTGAAAGATTTTGTGAGTGGCGAAAAACTTGCCTATTTTCGACCGCACTTTTCTTCCCCGCCCA
GAATTTTAAACGCGAATAAAATGCCTAAACTTTATTGGTTTTCAGATTCACAAGCAGAGGTTGAAATTAATGGCACCGTA
TCTGCCGTATTAATTGCAGAGGGCGATTTAAAATTGACTGGCAAAGGGAGAATTAGTGGCGCAGTGATTACCAGCGGGAA
TTTAACTTTAGATGGCGTAACTTTAGCTTATGGGAAAAAGACGGTGGTTGCTTTAGTGCAACAATATAGTCAGTGGCAGT
TAGCAGAAAAAAGTTGGAGTGATTTTAATGTTCAGGATGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

98.238

100

0.982

Multiple sequence alignment