Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   H4K32_RS19175 Genome accession   NZ_CP059855
Coordinates   3843289..3844068 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain Pm9     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3838289..3849068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4K32_RS19145 fliH 3838333..3839088 (-) 756 WP_003154255.1 flagellar assembly protein FliH -
  H4K32_RS19150 fliG 3839081..3840097 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  H4K32_RS19155 fliF 3840110..3841720 (-) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  H4K32_RS19160 fliE 3841763..3842083 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  H4K32_RS19165 flgC 3842094..3842546 (-) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  H4K32_RS19170 flgB 3842546..3842935 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  H4K32_RS19175 codY 3843289..3844068 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  H4K32_RS19180 hslU 3844106..3845509 (-) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  H4K32_RS19185 hslV 3845526..3846071 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  H4K32_RS19190 xerC 3846087..3847004 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  H4K32_RS19195 trmFO 3847074..3848381 (-) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=472329 H4K32_RS19175 WP_003154263.1 3843289..3844068(-) (codY) [Bacillus velezensis strain Pm9]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=472329 H4K32_RS19175 WP_003154263.1 3843289..3844068(-) (codY) [Bacillus velezensis strain Pm9]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAATGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCATTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471