Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   I6K18_RS10775 Genome accession   NZ_CP070007
Coordinates   2266876..2267343 (-) Length   155 a.a.
NCBI ID   WP_000338336.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1288     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2261876..2272343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K18_RS10750 (I6K18_10750) rpsG 2262017..2262487 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  I6K18_RS10755 (I6K18_10755) fusA 2262584..2264698 (+) 2115 WP_000124703.1 elongation factor G -
  I6K18_RS10760 (I6K18_10760) tuf 2264769..2265953 (+) 1185 WP_000031783.1 elongation factor Tu -
  I6K18_RS10765 (I6K18_10765) bfd 2266136..2266330 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  I6K18_RS10770 (I6K18_10770) bfr 2266403..2266879 (+) 477 WP_000675515.1 bacterioferritin -
  I6K18_RS10775 (I6K18_10775) pilD 2266876..2267343 (-) 468 WP_000338336.1 A24 family peptidase Machinery gene
  I6K18_RS10780 (I6K18_10780) rpsJ 2267722..2268033 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  I6K18_RS10785 (I6K18_10785) rplC 2268066..2268695 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  I6K18_RS10790 (I6K18_10790) rplD 2268706..2269311 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  I6K18_RS10795 (I6K18_10795) rplW 2269308..2269610 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  I6K18_RS10800 (I6K18_10800) rplB 2269628..2270449 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  I6K18_RS10805 (I6K18_10805) rpsS 2270466..2270744 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  I6K18_RS10810 (I6K18_10810) rplV 2270759..2271091 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  I6K18_RS10815 (I6K18_10815) rpsC 2271109..2271810 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  I6K18_RS10820 (I6K18_10820) rplP 2271823..2272233 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17034.17 Da        Isoelectric Point: 8.1255

>NTDB_id=471871 I6K18_RS10775 WP_000338336.1 2266876..2267343(-) (pilD) [Escherichia coli strain FDAARGOS_1288]
MDAALPFLILYACLSTLLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=471871 I6K18_RS10775 WP_000338336.1 2266876..2267343(-) (pilD) [Escherichia coli strain FDAARGOS_1288]
ATGGACGCTGCCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAACCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGGTTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGCCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTTTGCTTATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGTCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368