Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   H0H24_RS11585 Genome accession   NZ_CP059729
Coordinates   2473278..2473604 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain AbCTX13     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2468278..2478604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0H24_RS11565 (H0H24_11545) - 2468380..2469009 (-) 630 WP_000219974.1 FHA domain-containing protein -
  H0H24_RS11570 (H0H24_11550) gspD 2469050..2471326 (-) 2277 WP_001196437.1 type II secretion system secretin GspD -
  H0H24_RS11575 (H0H24_11555) - 2471368..2472204 (-) 837 WP_000870031.1 type II secretion system protein N -
  H0H24_RS11580 (H0H24_11560) gspN 2472204..2472947 (-) 744 WP_000730343.1 type II secretion system protein N -
  H0H24_RS11585 (H0H24_11565) hns 2473278..2473604 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  H0H24_RS11590 (H0H24_11570) - 2473799..2474239 (-) 441 WP_024432422.1 thioesterase family protein -
  H0H24_RS11595 (H0H24_11575) - 2474247..2475440 (-) 1194 WP_000681774.1 hypothetical protein -
  H0H24_RS11600 (H0H24_11580) - 2475450..2476289 (-) 840 WP_001230201.1 hypothetical protein -
  H0H24_RS11605 (H0H24_11585) - 2476298..2477065 (-) 768 WP_000897415.1 uroporphyrinogen-III synthase -
  H0H24_RS11610 (H0H24_11590) hemC 2477070..2477987 (-) 918 WP_031956197.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=471597 H0H24_RS11585 WP_000801427.1 2473278..2473604(-) (hns) [Acinetobacter baumannii strain AbCTX13]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=471597 H0H24_RS11585 WP_000801427.1 2473278..2473604(-) (hns) [Acinetobacter baumannii strain AbCTX13]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1