Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   I6K21_RS06885 Genome accession   NZ_CP069980
Coordinates   1471674..1472141 (+) Length   155 a.a.
NCBI ID   WP_000338336.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1291     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1466674..1477141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K21_RS06840 (I6K21_06845) rplP 1466784..1467194 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  I6K21_RS06845 (I6K21_06850) rpsC 1467207..1467908 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  I6K21_RS06850 (I6K21_06855) rplV 1467926..1468258 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  I6K21_RS06855 (I6K21_06860) rpsS 1468273..1468551 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  I6K21_RS06860 (I6K21_06865) rplB 1468568..1469389 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  I6K21_RS06865 (I6K21_06870) rplW 1469407..1469709 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  I6K21_RS06870 (I6K21_06875) rplD 1469706..1470311 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  I6K21_RS06875 (I6K21_06880) rplC 1470322..1470951 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  I6K21_RS06880 (I6K21_06885) rpsJ 1470984..1471295 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  I6K21_RS06885 (I6K21_06890) pilD 1471674..1472141 (+) 468 WP_000338336.1 A24 family peptidase Machinery gene
  I6K21_RS06890 (I6K21_06895) bfr 1472138..1472614 (-) 477 WP_000675515.1 bacterioferritin -
  I6K21_RS06895 (I6K21_06900) bfd 1472687..1472881 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  I6K21_RS06900 (I6K21_06905) tuf 1473064..1474248 (-) 1185 WP_000031783.1 elongation factor Tu -
  I6K21_RS06905 (I6K21_06910) fusA 1474319..1476433 (-) 2115 WP_000124703.1 elongation factor G -
  I6K21_RS06910 (I6K21_06915) rpsG 1476530..1477000 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17034.17 Da        Isoelectric Point: 8.1255

>NTDB_id=471597 I6K21_RS06885 WP_000338336.1 1471674..1472141(+) (pilD) [Escherichia coli strain FDAARGOS_1291]
MDAALPFLILYACLSTLLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=471597 I6K21_RS06885 WP_000338336.1 1471674..1472141(+) (pilD) [Escherichia coli strain FDAARGOS_1291]
ATGGACGCTGCCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAACCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGGTTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGCCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTTTGCTTATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGTCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368