Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   H3M14_RS03185 Genome accession   NZ_CP059697
Coordinates   638012..638572 (+) Length   186 a.a.
NCBI ID   WP_016265666.1    Uniprot ID   A0A9N7J0X6
Organism   Latilactobacillus sakei strain CBA3635     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 633012..643572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3M14_RS03160 (H3M14_03160) - 633060..634172 (+) 1113 WP_025015969.1 PIN/TRAM domain-containing protein -
  H3M14_RS03165 (H3M14_03165) cysS 634713..636119 (+) 1407 WP_016265668.1 cysteine--tRNA ligase -
  H3M14_RS03170 (H3M14_03170) - 636116..636523 (+) 408 WP_004265086.1 Mini-ribonuclease 3 -
  H3M14_RS03175 (H3M14_03175) rlmB 636510..637397 (+) 888 WP_082267747.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  H3M14_RS03180 (H3M14_03180) - 637401..637934 (+) 534 WP_016265667.1 NYN domain-containing protein -
  H3M14_RS03185 (H3M14_03185) sigH 638012..638572 (+) 561 WP_016265666.1 sigma-70 family RNA polymerase sigma factor Regulator
  H3M14_RS03190 (H3M14_03190) rpmG 638698..638847 (+) 150 WP_011375366.1 50S ribosomal protein L33 -
  H3M14_RS03195 (H3M14_03195) secE 638857..639036 (+) 180 WP_011375365.1 preprotein translocase subunit SecE -
  H3M14_RS03200 (H3M14_03200) nusG 639134..639682 (+) 549 WP_011375364.1 transcription termination/antitermination protein NusG -
  H3M14_RS03205 (H3M14_03205) - 640089..640946 (+) 858 WP_112260917.1 alpha/beta fold hydrolase -
  H3M14_RS03210 (H3M14_03210) rplK 641072..641497 (+) 426 WP_004270859.1 50S ribosomal protein L11 -
  H3M14_RS03215 (H3M14_03215) rplA 641596..642285 (+) 690 WP_004270847.1 50S ribosomal protein L1 -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 22072.18 Da        Isoelectric Point: 6.6722

>NTDB_id=471390 H3M14_RS03185 WP_016265666.1 638012..638572(+) (sigH) [Latilactobacillus sakei strain CBA3635]
MEQTKRDELLIAAVAQNDSQALDVLFKAYLPMVYHTVAPYYIRLFDEDDWLQEARIVCYETCQCYDCQKGKSFGSFYKLR
FKNHILNLLRRELAQKRRGDRQAVLIAERPEHDAISEDTMTYYQSQFELRCYLETLSPFELVSFRVLTGQLSIDEACCQL
DCTIDQLKRGQSRCQTKLKRYYQENR

Nucleotide


Download         Length: 561 bp        

>NTDB_id=471390 H3M14_RS03185 WP_016265666.1 638012..638572(+) (sigH) [Latilactobacillus sakei strain CBA3635]
ATGGAACAAACAAAGCGCGACGAACTGCTGATTGCAGCAGTGGCTCAGAATGATTCACAAGCACTAGATGTATTATTCAA
GGCGTATTTGCCGATGGTGTATCACACCGTGGCGCCATATTATATCCGGTTATTCGATGAAGACGATTGGTTACAAGAAG
CCCGGATTGTTTGTTACGAAACTTGCCAATGTTACGATTGTCAAAAAGGCAAAAGTTTTGGGAGTTTCTATAAATTACGG
TTTAAAAACCACATTTTAAATTTACTACGACGAGAACTCGCACAAAAACGGCGAGGTGATCGTCAGGCAGTATTGATTGC
GGAGCGGCCGGAACACGACGCGATTTCAGAAGATACGATGACTTACTATCAATCGCAGTTTGAATTGAGATGTTATCTTG
AAACGCTGTCGCCTTTTGAATTAGTGTCGTTTCGGGTGCTGACCGGGCAGCTTTCAATTGATGAAGCTTGTTGCCAACTC
GATTGTACGATTGACCAGTTGAAACGAGGCCAATCAAGGTGCCAGACTAAGTTAAAACGGTATTATCAAGAGAATCGTTA
A

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(25-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

97.849

100

0.978