Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ABD1_RS17190 Genome accession   NC_020547
Coordinates   3628112..3629377 (-) Length   421 a.a.
NCBI ID   WP_001285406.1    Uniprot ID   -
Organism   Acinetobacter baumannii D1279779     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3623112..3634377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABD1_RS17160 (ABD1_33230) pncA 3623331..3623975 (-) 645 WP_015451655.1 bifunctional nicotinamidase/pyrazinamidase -
  ABD1_RS17165 (ABD1_33240) dapA 3624306..3625199 (+) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  ABD1_RS17170 (ABD1_33250) - 3625215..3625817 (+) 603 WP_001177091.1 hypothetical protein -
  ABD1_RS17175 (ABD1_33260) purC 3625856..3626575 (+) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  ABD1_RS17180 (ABD1_33270) - 3626768..3626971 (+) 204 WP_000418559.1 hypothetical protein -
  ABD1_RS17185 (ABD1_33280) - 3627257..3628096 (+) 840 WP_000349492.1 formate/nitrite transporter family protein -
  ABD1_RS17190 (ABD1_33290) rarA 3628112..3629377 (-) 1266 WP_001285406.1 replication-associated recombination protein A Machinery gene
  ABD1_RS17195 (ABD1_33300) - 3629483..3630655 (-) 1173 WP_000986263.1 PQQ-dependent sugar dehydrogenase -
  ABD1_RS17200 (ABD1_33310) - 3630765..3631223 (-) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  ABD1_RS17205 (ABD1_33320) - 3631418..3631576 (+) 159 WP_000490267.1 DUF1328 domain-containing protein -
  ABD1_RS17210 (ABD1_33330) - 3631748..3632485 (+) 738 WP_000100774.1 dienelactone hydrolase family protein -
  ABD1_RS17215 (ABD1_33340) - 3632673..3633035 (+) 363 WP_000130111.1 HIT family protein -
  ABD1_RS17220 (ABD1_33350) mutY 3633177..3634211 (+) 1035 WP_001113865.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46945.60 Da        Isoelectric Point: 5.8354

>NTDB_id=47136 ABD1_RS17190 WP_001285406.1 3628112..3629377(-) (rarA) [Acinetobacter baumannii D1279779]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTINNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=47136 ABD1_RS17190 WP_001285406.1 3628112..3629377(-) (rarA) [Acinetobacter baumannii D1279779]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGACATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTAAATACGGGCGTA
AAAGAATTACGTGAAGTGATTGCAGAAAGTGGTGACTTACTGACACCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAAGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGTTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAAGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CGATTAATAATGCAGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCGGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
CGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCAATTAATAAGGCCTTAGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAACTGATGAAACAGCAAGGTTATGGAATTAATTATCTCT
ATCCTCATGACTACCCAGAGCACTTTGTACTGCAAGACTACTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCCTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.303

95.487

0.375

Multiple sequence alignment