Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   CMOL_RS04960 Genome accession   NZ_CP059597
Coordinates   992051..992566 (-) Length   171 a.a.
NCBI ID   WP_239819951.1    Uniprot ID   -
Organism   Campylobacter sp. RM10537     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 987051..997566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMOL_RS04945 (CMOL_0983) - 987152..988885 (-) 1734 WP_239819949.1 flagellin A -
  CMOL_RS04950 (CMOL_0984) - 988992..990812 (-) 1821 WP_239819950.1 motility associated factor glycosyltransferase family protein -
  CMOL_RS04955 (CMOL_0985) - 990809..992061 (-) 1253 Protein_959 DUF2920 family protein -
  CMOL_RS04960 (CMOL_0986) ctsG 992051..992566 (-) 516 WP_239819951.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CMOL_RS04965 (CMOL_0987) tsaD 992570..993577 (-) 1008 WP_239819952.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  CMOL_RS04970 (CMOL_0988) - 993574..994962 (-) 1389 WP_239819953.1 M99 family carboxypeptidase catalytic domain-containing protein -
  CMOL_RS04975 (CMOL_0989) dxr 994962..996035 (-) 1074 WP_239819954.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  CMOL_RS04980 (CMOL_0990) - 996032..996757 (-) 726 WP_239819955.1 phosphatidate cytidylyltransferase -
  CMOL_RS04985 (CMOL_0991) - 996768..997106 (-) 339 WP_200280646.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18602.38 Da        Isoelectric Point: 5.9378

>NTDB_id=471193 CMOL_RS04960 WP_239819951.1 992051..992566(-) (ctsG) [Campylobacter sp. RM10537]
MKKAFTILELVFVIIILGILAAIALPKLSSSKDEAEISKSLNNLKTLINDISIYALKNDALSTIKSMSNVSGVENIDLKD
FSGIKEANFRVGDDEQCLKLVFVNKSDFILMGISSNETSKKVIENGSSSDLENIDFTSTSKSKACVSLSKNEHFKNLASK
TYTLIGVNDAN

Nucleotide


Download         Length: 516 bp        

>NTDB_id=471193 CMOL_RS04960 WP_239819951.1 992051..992566(-) (ctsG) [Campylobacter sp. RM10537]
ATGAAAAAAGCTTTTACGATTTTAGAACTTGTTTTTGTGATTATTATTTTAGGAATTTTAGCAGCTATTGCCTTGCCTAA
ATTAAGCTCAAGCAAAGATGAAGCAGAAATAAGTAAATCTTTGAATAATTTAAAAACTTTGATTAATGATATCAGTATTT
ATGCTTTAAAAAATGATGCCTTAAGTACTATAAAATCCATGAGTAATGTTAGCGGGGTTGAAAATATTGATTTAAAAGAT
TTTAGCGGAATAAAAGAAGCAAATTTTCGCGTAGGTGATGATGAACAGTGTTTAAAACTTGTATTTGTTAATAAATCAGA
TTTTATTTTGATGGGAATTTCAAGTAATGAAACTAGCAAAAAAGTTATAGAAAATGGCTCTAGTTCTGATTTGGAAAACA
TTGATTTTACAAGTACCTCTAAAAGTAAAGCTTGTGTATCTTTGAGTAAAAATGAACATTTTAAAAACCTTGCCTCAAAA
ACTTATACTTTAATAGGGGTCAATGATGCAAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

77.515

98.83

0.766