Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   KHP_RS04920 Genome accession   NC_017382
Coordinates   1032252..1032515 (-) Length   87 a.a.
NCBI ID   WP_001177709.1    Uniprot ID   A0AAI7ZWI8
Organism   Helicobacter pylori 51     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1027252..1037515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHP_RS04895 (KHP_0928) - 1027999..1029168 (-) 1170 WP_000067674.1 VirB8/TrbF family protein -
  KHP_RS04900 - 1029161..1029295 (-) 135 WP_000738751.1 hypothetical protein -
  KHP_RS08390 - 1029292..1031482 (-) 2191 Protein_953 VirB4 family type IV secretion/conjugal transfer ATPase -
  KHP_RS04910 - 1031610..1032005 (-) 396 Protein_954 transporter -
  KHP_RS04915 (KHP_0930) - 1032005..1032241 (-) 237 WP_001183706.1 hypothetical protein -
  KHP_RS04920 (KHP_0931) comB3 1032252..1032515 (-) 264 WP_001177709.1 hypothetical protein Machinery gene
  KHP_RS04925 (KHP_0932) - 1032526..1032809 (-) 284 Protein_957 TrbC/VirB2 family protein -
  KHP_RS04930 (KHP_0933) - 1032806..1033285 (-) 480 WP_000571125.1 hypothetical protein -
  KHP_RS04935 - 1033389..1034177 (-) 789 WP_195154812.1 integrase -
  KHP_RS04940 (KHP_0935) - 1034474..1035303 (+) 830 Protein_960 hypothetical protein -
  KHP_RS04945 (KHP_0936) - 1035409..1036302 (+) 894 WP_000506876.1 hypothetical protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10016.96 Da        Isoelectric Point: 6.9732

>NTDB_id=47110 KHP_RS04920 WP_001177709.1 1032252..1032515(-) (comB3) [Helicobacter pylori 51]
MQLVGISVSKLKEISSKEKFLWLNAKSFLIAGFIPFVMIPWLDFLNSLMLYVCFLLVFSIAEFFDEDISDILIAHSKIKT
KTNSFYA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=47110 KHP_RS04920 WP_001177709.1 1032252..1032515(-) (comB3) [Helicobacter pylori 51]
ATGCAATTAGTCGGCATTTCAGTTTCTAAACTCAAAGAAATCAGTTCTAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTAATCGCAGGATTTATTCCTTTTGTAATGATACCTTGGCTAGATTTTTTAAATTCTTTAATGCTGTATGTGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGCGACATTTTAATCGCCCATTCTAAGATTAAAACC
AAAACTAATTCATTTTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

58.621

100

0.586

Multiple sequence alignment