Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   I6K87_RS09640 Genome accession   NZ_CP069892
Coordinates   1945628..1946416 (+) Length   262 a.a.
NCBI ID   WP_003028802.1    Uniprot ID   A0ABR7CS16
Organism   Streptococcus anginosus strain FDAARGOS_1357     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1940628..1951416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K87_RS09620 (I6K87_09620) - 1941186..1942148 (-) 963 WP_049534419.1 asparaginase -
  I6K87_RS09625 (I6K87_09625) - 1942213..1943601 (+) 1389 WP_049534417.1 Cof-type HAD-IIB family hydrolase -
  I6K87_RS09630 (I6K87_09630) - 1943645..1944097 (-) 453 WP_049534414.1 universal stress protein -
  I6K87_RS09635 (I6K87_09635) - 1944249..1945463 (+) 1215 WP_003039623.1 pyridoxal phosphate-dependent aminotransferase -
  I6K87_RS09640 (I6K87_09640) codY 1945628..1946416 (+) 789 WP_003028802.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  I6K87_RS09645 (I6K87_09645) - 1946416..1946991 (+) 576 WP_049534410.1 cysteine hydrolase family protein -
  I6K87_RS09650 (I6K87_09650) aspS 1947502..1949241 (+) 1740 WP_204982607.1 aspartate--tRNA ligase -
  I6K87_RS09655 (I6K87_09655) gatC 1949318..1949620 (+) 303 WP_003028817.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  I6K87_RS09660 (I6K87_09660) gatA 1949620..1951086 (+) 1467 WP_003028819.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29723.03 Da        Isoelectric Point: 5.0797

>NTDB_id=471058 I6K87_RS09640 WP_003028802.1 1945628..1946416(+) (codY) [Streptococcus anginosus strain FDAARGOS_1357]
MANLLAKTRKITSILRRSDERLQDELPYNAITQQLAEIMDCNACIVNSKGRLLGYFMRYKTNNDRVEAFYQTKIFPEEYV
RTANLMYDTEANLPVNHDLSIFPVETKDEFPDGLTTISPIHVSGIRLGTLIVWRNDKEFDDDDLILVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELNGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPDVFEEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=471058 I6K87_RS09640 WP_003028802.1 1945628..1946416(+) (codY) [Streptococcus anginosus strain FDAARGOS_1357]
ATGGCAAACTTATTAGCAAAAACACGAAAAATTACATCTATTTTGCGTCGTTCAGATGAGCGATTGCAAGATGAATTACC
TTACAATGCAATTACTCAGCAGTTAGCTGAAATTATGGATTGCAATGCCTGCATTGTAAACAGTAAAGGGCGTCTTTTGG
GGTATTTCATGCGCTACAAGACGAATAATGACCGAGTGGAAGCATTTTATCAAACGAAAATCTTCCCAGAAGAATATGTT
CGCACAGCGAATTTAATGTATGACACAGAAGCCAATCTTCCTGTCAATCATGATTTGTCAATTTTTCCTGTCGAAACCAA
AGATGAATTTCCAGATGGCTTGACGACAATTTCACCTATCCACGTTTCAGGGATTCGCTTAGGGACCTTGATTGTTTGGC
GCAATGATAAAGAATTTGACGATGATGATCTAATCTTAGTAGAAATTGCAAGTACAGTGGTTGGTATTCAGTTACTCAAT
TTCCAACGAGAAGAAGATGAAAAAAATATTCGTCGCAGAACAGCGGTAACCATGGCTGTAAATACTTTGTCTTATTCAGA
ATTACGAGCTGTTTCAGCTATTTTAGGTGAATTAAACGGTAATGAAGGTCAATTGACAGCATCGGTCATTGCGGATCGTA
TTGGCATTACTCGCTCGGTGATTGTCAATGCTCTGCGTAAACTAGAGAGTGCAGGTATTATTGAAAGTCGTTCTTTAGGA
ATGAAAGGAACCTATCTTAAAGTCCTTATTCCCGATGTCTTTGAAGAGATTAAAAAGAGAGATTACTGA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

61.832

100

0.618
  codY Bacillus subtilis subsp. subtilis str. 168

50.407

93.893

0.473