Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   I6K87_RS06230 Genome accession   NZ_CP069892
Coordinates   1275554..1276825 (+) Length   423 a.a.
NCBI ID   WP_049516989.1    Uniprot ID   -
Organism   Streptococcus anginosus strain FDAARGOS_1357     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1270554..1281825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K87_RS06200 (I6K87_06200) - 1272000..1272146 (-) 147 WP_003028899.1 hypothetical protein -
  I6K87_RS06205 (I6K87_06205) - 1272312..1273055 (-) 744 WP_070670061.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  I6K87_RS06210 (I6K87_06210) prmA 1273056..1274009 (-) 954 WP_195673685.1 50S ribosomal protein L11 methyltransferase -
  I6K87_RS06215 (I6K87_06215) - 1274013..1274492 (-) 480 WP_204982477.1 GNAT family N-acetyltransferase -
  I6K87_RS06220 (I6K87_06220) - 1274489..1274932 (-) 444 WP_204982478.1 NUDIX hydrolase -
  I6K87_RS06225 (I6K87_06225) - 1274982..1275452 (-) 471 WP_204982479.1 DUF3013 family protein -
  I6K87_RS06230 (I6K87_06230) rarA 1275554..1276825 (+) 1272 WP_049516989.1 replication-associated recombination protein A Machinery gene
  I6K87_RS06240 (I6K87_06240) - 1277393..1277906 (+) 514 Protein_1223 DUF308 domain-containing protein -
  I6K87_RS06245 (I6K87_06245) - 1277977..1278636 (-) 660 WP_049533303.1 HD domain-containing protein -
  I6K87_RS06250 (I6K87_06250) - 1278701..1279339 (-) 639 WP_003026903.1 deoxynucleoside kinase -
  I6K87_RS06255 (I6K87_06255) - 1279526..1280293 (-) 768 WP_059221202.1 epoxyqueuosine reductase QueH -
  I6K87_RS06260 (I6K87_06260) - 1280382..1280546 (-) 165 WP_158255649.1 hypothetical protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46895.49 Da        Isoelectric Point: 6.7822

>NTDB_id=471005 I6K87_RS06230 WP_049516989.1 1275554..1276825(+) (rarA) [Streptococcus anginosus strain FDAARGOS_1357]
MPDNLAIRMRPKNINQVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGLIIMIGATTENPFFSVTPAIRSRVQIFELEPLINDDIKQAIQ
TALTDTKRGFDFPVQLDDDALDFIATSTNGDLRSAFNSLDLAVLSTQSDNTGVRHITLDIMENSLQKSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPDAQIHTVTALEAAQKIGFPEARILIANIV
IDLALSPKSNSAYVAMDKALSDLRQNGNLAIPRHLRDGHYVGSKELGNAQDYKYPHNYPGNWVKQDYLPEKIKYADYFIP
NENGKYERALGMTKNKIDQLKNN

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=471005 I6K87_RS06230 WP_049516989.1 1275554..1276825(+) (rarA) [Streptococcus anginosus strain FDAARGOS_1357]
ATGCCAGACAATTTAGCGATTCGCATGCGGCCTAAAAATATCAATCAGGTCATCGGTCAGAAACATCTGGTCGGTGAAGG
AAAAATCATTCGTCGCATGGTGGAAGCCAATCGCCTGTCTTCCATGATTCTCTATGGTCCGCCAGGGATTGGCAAGACTT
CAATTGCTTCGGCTATTGCTGGAACTACCAAATTTGCTTTTCGGACCTTTAATGCTACTGTTGATAGTAAGAAGCGTCTG
CAAGAGATTGCGGAAGAAGCCAAATTCTCTGGTGGTTTGGTGCTGCTGTTAGACGAGATTCACCGCTTGGATAAGACAAA
GCAGGACTTCCTCCTCCCTCTGTTAGAAAACGGTCTAATCATCATGATTGGTGCCACAACAGAAAATCCTTTTTTCTCCG
TCACTCCCGCTATTCGCAGCCGGGTACAGATTTTCGAGTTGGAACCTCTGATAAATGATGATATTAAACAAGCCATCCAA
ACAGCCCTGACGGACACCAAACGAGGCTTTGACTTTCCTGTCCAGCTAGATGATGACGCTCTGGATTTCATTGCCACTTC
CACGAATGGAGACTTGCGCTCAGCCTTTAATTCTCTAGATTTAGCAGTTCTCTCTACTCAATCAGATAATACAGGCGTTC
GCCATATCACTCTGGATATTATGGAAAACAGCCTGCAAAAGAGCTACATCACTATGGACAAGGACGGAGACGGGCACTAT
GACGTTCTGTCCGCCTTACAGAAGTCTATTCGCGGGTCTGATGTCAATGCCAGTCTCCATTATGCAGCTCGCTTGATTGA
AGCCGGAGACCTTCCCAGTCTTGCACGACGTCTGACGGTCATCGCTTATGAGGACATTGGTCTGGCAAACCCCGATGCTC
AGATTCATACGGTGACTGCACTTGAAGCCGCTCAGAAAATCGGATTCCCAGAAGCTCGCATCCTCATTGCCAACATTGTC
ATTGACCTAGCGCTCTCTCCTAAGTCCAACTCGGCCTACGTAGCCATGGACAAGGCGCTCTCTGACTTGCGCCAGAACGG
AAATCTCGCTATCCCCCGTCATCTACGAGACGGTCATTACGTCGGAAGCAAGGAGCTGGGAAATGCGCAGGATTACAAAT
ATCCACATAACTATCCTGGTAACTGGGTGAAACAAGATTATCTTCCTGAAAAAATAAAATATGCCGATTATTTCATTCCA
AATGAAAATGGAAAGTATGAACGAGCCCTTGGCATGACTAAAAATAAGATTGATCAATTAAAAAACAACTAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-410)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.903

97.872

0.586