Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPPN120_RS00095 Genome accession   NC_017378
Coordinates   13743..14006 (+) Length   87 a.a.
NCBI ID   WP_000584962.1    Uniprot ID   -
Organism   Helicobacter pylori Puno120     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8743..19006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPPN120_RS00070 (HPPN120_00050) groES 9038..9394 (-) 357 WP_000671941.1 co-chaperone GroES -
  HPPN120_RS00075 (HPPN120_00055) dnaG 9669..11348 (+) 1680 WP_000601612.1 DNA primase -
  HPPN120_RS00080 (HPPN120_00060) - 11345..12397 (+) 1053 WP_000802573.1 MnmA/TRMU family protein -
  HPPN120_RS00085 (HPPN120_00070) - 12489..13316 (+) 828 WP_001154909.1 DUF5718 family protein -
  HPPN120_RS00090 (HPPN120_00075) comB2 13462..13743 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HPPN120_RS00095 (HPPN120_00080) comB3 13743..14006 (+) 264 WP_000584962.1 hypothetical protein Machinery gene
  HPPN120_RS00100 (HPPN120_00085) comB4 14008..16371 (+) 2364 WP_000890538.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPPN120_RS00105 (HPPN120_00090) - 16592..18052 (+) 1461 WP_195182491.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10076.17 Da        Isoelectric Point: 9.5507

>NTDB_id=47037 HPPN120_RS00095 WP_000584962.1 13743..14006(+) (comB3) [Helicobacter pylori Puno120]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLVLFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=47037 HPPN120_RS00095 WP_000584962.1 13743..14006(+) (comB3) [Helicobacter pylori Puno120]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTACTGTATTTAGGGT
TTTTAGTGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

96.552

100

0.966

Multiple sequence alignment