Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   JS559_RS04860 Genome accession   NZ_CP069795
Coordinates   1021101..1022441 (-) Length   446 a.a.
NCBI ID   WP_005603748.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain A-85/14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1016101..1027441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS559_RS04835 (JS559_04830) - 1016533..1016862 (-) 330 Protein_946 ESPR domain-containing protein -
  JS559_RS04840 (JS559_04835) - 1017122..1017811 (-) 690 WP_009875081.1 SanA/YdcF family protein -
  JS559_RS04845 (JS559_04840) metX 1018103..1019179 (+) 1077 WP_011848377.1 homoserine O-acetyltransferase MetX -
  JS559_RS04850 (JS559_04845) - 1019259..1020056 (-) 798 WP_005596509.1 class II glutamine amidotransferase -
  JS559_RS04855 (JS559_04850) znuB 1020235..1021020 (-) 786 WP_005596508.1 zinc ABC transporter permease subunit ZnuB -
  JS559_RS04860 (JS559_04855) rarA 1021101..1022441 (-) 1341 WP_005603748.1 replication-associated recombination protein A Machinery gene
  JS559_RS04865 (JS559_04860) mreD 1022454..1022942 (-) 489 WP_005596506.1 rod shape-determining protein MreD -
  JS559_RS04870 (JS559_04865) mreC 1022942..1023991 (-) 1050 WP_005596505.1 rod shape-determining protein MreC -
  JS559_RS04875 (JS559_04870) - 1024108..1025160 (-) 1053 WP_005607179.1 rod shape-determining protein -
  JS559_RS04880 (JS559_04875) gap 1025355..1026359 (-) 1005 WP_005619027.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  JS559_RS04885 (JS559_04880) msrB 1026582..1026977 (+) 396 WP_005619026.1 peptide-methionine (R)-S-oxide reductase MsrB -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50223.85 Da        Isoelectric Point: 6.6974

>NTDB_id=470320 JS559_RS04860 WP_005603748.1 1021101..1022441(-) (rarA) [Actinobacillus pleuropneumoniae strain A-85/14]
MSSLSFDFSEDFRPLPARMRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIAHHFDAEVERL
SAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRAKIYI
LKPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMAEISPQGKHLNKALLAEVLG
ERQARFDKGGDRYYDLISALHKSVRGSSPDGALYWYARILTAGGDPLYVARRLLAIASEDIGNADPRAMQVAINAWDCYT
RVGAYEGERAIAQAVIYLAVAPKSNAVYNAFNEAKRLAKEGKDYDVPEHLRNAPTKLMKSLGYGEEYRYAHHEPNAYAAG
ENYFPPELKDTVFYHPTERGMEKQIKEKLQWLNAQDQASLQQRYKR

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=470320 JS559_RS04860 WP_005603748.1 1021101..1022441(-) (rarA) [Actinobacillus pleuropneumoniae strain A-85/14]
ATGAGTAGTTTGTCCTTTGATTTTTCAGAAGATTTTAGACCGCTGCCCGCCAGAATGCGTCCACGCACACTGGCGGAGTA
TATCGGGCAAGCTCATCTTATCGGAGAAGGTAAACCGCTACGCCGCGCGATAGAAGCGGGACATTCTCATTCCATGATCT
TCTGGGGGCCTCCCGGTACCGGTAAAACGACATTAGCGGAAATTATCGCGCATCATTTTGATGCGGAAGTGGAACGCCTT
TCTGCGGTTACCAGCGGTGTGAAGGAAATCAGAGAAGCGATAGAGCGGGCTAAGCTCAATCGACAAACCGGCAGACGAAC
ATTACTTTTTGTCGATGAAGTACACCGTTTTAATAAAAGCCAACAAGACGCTTTTCTGCCGCATATTGAAGACGGCACCA
TTATTTTTATCGGTGCGACAACCGAGAATCCATCCTTTGAATTAAATAACGCCTTACTTTCCCGTGCGAAAATCTATATT
TTAAAACCGTTGCAAGCGGTTGAAATTGCACAAGTTTTAACTAATGCGCTTTACGATAAAGAACGAGGCTTAGGTAATGA
AAGCTATTACATCGAAGATAATGTGATTGAATTACTCGCCGATTATGTAAATGGAGATGCGAGATTCGCTTTAAATTGCT
TAGAACTGATGTCGGATATGGCAGAGATTTCCCCTCAAGGAAAACACCTGAATAAAGCATTGTTAGCCGAAGTATTGGGA
GAGCGACAAGCTCGATTTGATAAAGGCGGCGATCGTTACTATGATTTAATCTCGGCATTGCATAAGTCGGTACGGGGCTC
ATCACCGGACGGCGCGTTGTATTGGTATGCGAGAATTTTAACCGCAGGCGGCGATCCTTTGTATGTTGCGCGCCGATTAT
TGGCAATCGCTTCGGAAGATATTGGCAATGCTGACCCTAGAGCGATGCAAGTTGCGATTAACGCTTGGGATTGCTATACC
CGAGTCGGGGCTTACGAAGGTGAAAGAGCGATTGCGCAAGCGGTGATTTATTTGGCGGTTGCGCCAAAAAGCAATGCGGT
TTATAACGCTTTCAATGAAGCGAAACGTCTTGCGAAAGAGGGCAAAGATTACGATGTACCGGAACATCTGCGCAATGCAC
CGACTAAGTTGATGAAATCGTTAGGTTACGGTGAAGAATATCGTTACGCACATCATGAACCGAACGCTTATGCCGCCGGC
GAAAACTACTTCCCGCCGGAATTAAAAGATACGGTATTTTATCACCCGACGGAACGGGGAATGGAAAAACAAATTAAGGA
AAAATTGCAGTGGCTTAATGCACAGGATCAAGCCAGCTTACAACAACGTTACAAGCGGTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(19-143)

MgsA AAA+ ATPase C terminal (MgsA_C)

(266-432)

AAA C-terminal domain (AAA_assoc_2)

(186-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

41.135

94.843

0.39