Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   H1Q58_RS07210 Genome accession   NZ_CP059540
Coordinates   1445298..1447745 (+) Length   815 a.a.
NCBI ID   WP_182093241.1    Uniprot ID   -
Organism   Planococcus maritimus strain XJ11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1440298..1452745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1Q58_RS07185 (H1Q58_07185) - 1440478..1441761 (-) 1284 WP_182093237.1 replication-associated recombination protein A -
  H1Q58_RS07190 (H1Q58_07190) - 1441899..1442315 (+) 417 WP_058380971.1 Rrf2 family transcriptional regulator -
  H1Q58_RS07195 (H1Q58_07195) - 1442330..1443463 (+) 1134 WP_182093238.1 cysteine desulfurase family protein -
  H1Q58_RS07200 (H1Q58_07200) mnmA 1443479..1444597 (+) 1119 WP_182093239.1 tRNA 2-thiouridine(34) synthase MnmA -
  H1Q58_RS07205 (H1Q58_07205) - 1444612..1445271 (+) 660 WP_182093240.1 tetratricopeptide repeat protein -
  H1Q58_RS07210 (H1Q58_07210) recD2 1445298..1447745 (+) 2448 WP_182093241.1 ATP-dependent RecD-like DNA helicase Machinery gene
  H1Q58_RS07215 (H1Q58_07215) alaS 1448051..1450675 (+) 2625 WP_182093242.1 alanine--tRNA ligase -
  H1Q58_RS07220 (H1Q58_07220) - 1450763..1451029 (+) 267 WP_058383651.1 IreB family regulatory phosphoprotein -
  H1Q58_RS07225 (H1Q58_07225) ruvX 1451032..1451448 (+) 417 WP_068461903.1 Holliday junction resolvase RuvX -
  H1Q58_RS07230 (H1Q58_07230) - 1451462..1451770 (+) 309 WP_058380964.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 815 a.a.        Molecular weight: 90092.77 Da        Isoelectric Point: 5.0270

>NTDB_id=470265 H1Q58_RS07210 WP_182093241.1 1445298..1447745(+) (recD2) [Planococcus maritimus strain XJ11]
MSGQIDLFQKESEFVLGRPVVSIFHNPQNLFSIIKVKIQQTNTPYTEKEIIVSGYFPKLSLEEQYKFTGSVKNHPKYGVQ
FQAETFKKEVPETEQGVVHYLSSDLFNGVGRKTAETIVKKLGSDAIKKILEDPDALDGVPRLSDEKKDTIRSTLQMNLGL
ERVMIQLNDWGFGPQIGMRIYQAYREETIDILSKNPFQLIEEIEGIGFHRADELGSKLGITGSHPDRIKAAILHVLNQAS
LSEGHVFVDAKNLIPLVKQLLEASQSADITIDSITQAAIELNEEGKVAGEETRLYLPSLYYSEVGIATKLETLIAEQETR
DGFPSSEIRKALGDAEERLGVNYAETQIDAIEKSLNSSVMILTGGPGTGKTTVVRGLVEVYAELHGLSLDPKEYGKKKEP
FPIILAAPTGRAAKRLSESTDLPAMTIHRLLGFNGQEKDEETEKEIEGKLIIIDEMSMVDTWLAHQLLKAVPVDAQLIFV
GDQDQLPPVGPGQVLRDMLASGRIPKVELTEIYRQSSGSSIIELAHQMKAGKLPDNIEAKTSDRSFIRAGADQISTVVEK
VVKSALSKGHTIKDIQVLAPMYKGPAGIDALNQMIQQMVNPNDDGSRKELVFGDVTYRINDKVLQLVNQPESNVFNGDMG
EVVAIMKAKETVEKQDLLVVSFDGIEVTYQRSDLNQLTLAYCCSIHKAQGSEFPTVIMPVVRGYMKMLRRNLLYTGITRS
RDFLILCGDPGVFRYGVERTDDSSRLTTLAVRLGVAETPATPEGTVTDNPAQAKTEQAVSETQADEPKSLTQQNAHRIHP
MIGMEGITPRDFQEA

Nucleotide


Download         Length: 2448 bp        

>NTDB_id=470265 H1Q58_RS07210 WP_182093241.1 1445298..1447745(+) (recD2) [Planococcus maritimus strain XJ11]
ATGTCCGGACAGATTGATTTATTCCAAAAAGAAAGTGAATTTGTGCTGGGGCGTCCGGTCGTCTCGATTTTTCACAACCC
CCAAAACCTCTTCTCCATCATCAAAGTGAAAATCCAGCAAACCAACACCCCGTATACCGAAAAGGAAATCATCGTCTCCG
GTTATTTCCCGAAACTGTCGCTTGAAGAACAATACAAGTTTACCGGCAGCGTTAAGAATCATCCAAAATACGGCGTGCAG
TTCCAGGCAGAAACCTTTAAGAAAGAAGTGCCGGAAACCGAACAAGGCGTTGTCCATTATTTATCGAGCGATTTGTTCAA
CGGTGTCGGTCGCAAAACGGCCGAGACCATCGTTAAAAAACTCGGCAGCGATGCTATCAAGAAAATCCTTGAAGACCCGG
ATGCACTTGACGGCGTACCGCGTTTATCAGATGAAAAAAAAGATACCATCCGCTCGACATTGCAGATGAATTTAGGCCTT
GAACGCGTCATGATCCAATTAAACGATTGGGGATTCGGCCCGCAAATCGGCATGAGAATTTATCAGGCTTACCGGGAAGA
AACGATTGACATTCTTTCGAAAAATCCGTTTCAGTTGATCGAGGAAATCGAAGGCATCGGCTTTCACCGTGCGGACGAAC
TCGGCTCAAAGCTCGGCATTACCGGAAGCCATCCTGACCGTATTAAAGCAGCCATCCTACATGTGCTGAACCAAGCGTCA
TTATCGGAAGGGCATGTGTTTGTTGATGCGAAAAATTTAATCCCGCTCGTCAAGCAATTGCTTGAAGCGAGCCAATCAGC
GGATATTACAATCGACTCGATCACACAGGCAGCAATCGAATTAAACGAGGAAGGCAAAGTGGCGGGGGAAGAAACCCGCC
TTTATTTGCCGTCTTTGTATTATTCGGAAGTGGGCATCGCGACTAAACTCGAGACCTTGATTGCCGAACAAGAAACGCGC
GATGGCTTTCCGTCTTCTGAAATCCGCAAAGCGCTTGGCGACGCCGAAGAGCGGCTTGGCGTCAATTATGCGGAGACTCA
GATCGATGCCATTGAAAAAAGCTTAAATTCCAGCGTAATGATTCTCACAGGCGGGCCAGGGACAGGCAAGACGACGGTCG
TTCGCGGCTTAGTCGAAGTCTATGCCGAACTGCATGGTCTGTCGCTCGATCCGAAAGAGTATGGCAAGAAAAAAGAACCG
TTTCCGATCATTTTGGCAGCTCCAACAGGTCGTGCGGCGAAACGGCTGAGTGAATCGACTGATTTGCCGGCGATGACGAT
TCACCGCTTGCTCGGCTTTAACGGCCAAGAGAAAGATGAAGAAACCGAAAAAGAAATTGAAGGCAAATTGATCATCATCG
ATGAAATGTCGATGGTCGACACATGGCTTGCCCATCAATTGTTAAAAGCGGTTCCAGTCGATGCCCAGCTAATTTTTGTC
GGCGACCAGGATCAATTGCCGCCTGTTGGCCCTGGCCAAGTGCTGCGTGATATGCTAGCATCCGGCCGCATCCCGAAAGT
CGAGCTGACGGAAATTTACCGCCAAAGTTCGGGTTCGTCCATTATTGAACTCGCCCACCAAATGAAAGCCGGAAAACTGC
CGGATAATATCGAAGCAAAAACGTCAGACCGTTCATTTATCCGTGCCGGGGCAGACCAAATTTCGACCGTTGTCGAAAAA
GTGGTTAAGAGCGCTTTGTCAAAAGGGCATACGATCAAAGACATTCAAGTGCTCGCACCGATGTACAAGGGGCCAGCAGG
CATCGATGCGCTCAACCAAATGATCCAGCAGATGGTCAACCCGAATGATGACGGTTCCCGCAAAGAGCTGGTATTTGGCG
ATGTCACTTACCGTATTAACGACAAAGTGCTGCAGCTAGTGAATCAACCCGAGAGCAATGTCTTCAATGGGGATATGGGC
GAAGTGGTCGCCATCATGAAAGCGAAAGAAACGGTGGAAAAGCAGGATTTGCTCGTTGTGTCATTTGACGGCATCGAAGT
GACTTACCAGCGCAGTGATTTAAACCAGCTGACGCTCGCTTATTGCTGTTCGATTCATAAAGCACAAGGCTCGGAATTTC
CGACGGTCATCATGCCGGTTGTTCGTGGTTACATGAAAATGCTGCGACGCAATTTGCTCTACACTGGCATCACAAGAAGC
CGCGACTTTTTAATTCTTTGCGGTGACCCGGGCGTATTTCGCTACGGCGTCGAGCGCACCGATGATTCGAGCCGCTTGAC
GACCTTGGCAGTTAGGTTGGGAGTTGCTGAGACACCAGCAACGCCAGAAGGAACAGTGACAGACAATCCGGCACAAGCAA
AAACCGAACAGGCGGTTTCCGAAACGCAAGCCGACGAGCCGAAAAGCCTGACACAGCAAAATGCCCACCGCATCCATCCG
ATGATCGGCATGGAAGGCATCACCCCGCGCGACTTCCAAGAAGCGTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-652)

AAA domain (AAA_30)

(343-550)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

54.895

99.018

0.544