Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   JR441_RS06005 Genome accession   NZ_CP069789
Coordinates   1173091..1174008 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain BIM B-569G     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1168091..1179008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR441_RS05990 (JR441_05990) trpS 1168672..1169664 (-) 993 WP_198878864.1 tryptophan--tRNA ligase -
  JR441_RS05995 (JR441_05995) oppA 1170408..1172045 (+) 1638 WP_048654863.1 oligopeptide ABC transporter substrate-binding protein OppA -
  JR441_RS06000 (JR441_06000) oppB 1172152..1173087 (+) 936 WP_048654864.1 oligopeptide ABC transporter permease OppB -
  JR441_RS06005 (JR441_06005) amiD 1173091..1174008 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  JR441_RS06010 (JR441_06010) oppD 1174013..1175089 (+) 1077 WP_077670618.1 oligopeptide ABC transporter ATP-binding protein OppD -
  JR441_RS06015 (JR441_06015) oppF 1175091..1176008 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  JR441_RS06020 (JR441_06020) yjbB 1176115..1177332 (+) 1218 WP_088467689.1 MFS transporter -
  JR441_RS06025 (JR441_06025) yjbC 1177496..1178074 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  JR441_RS06030 (JR441_06030) spx 1178255..1178650 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=470190 JR441_RS06005 WP_003232954.1 1173091..1174008(+) (amiD) [Bacillus subtilis strain BIM B-569G]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=470190 JR441_RS06005 WP_003232954.1 1173091..1174008(+) (amiD) [Bacillus subtilis strain BIM B-569G]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGTATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTCGATTTGCTGATCGGCGTTATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTTTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCAATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGCTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364