Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   H2R00_RS06435 Genome accession   NZ_CP059494
Coordinates   1309821..1310600 (-) Length   259 a.a.
NCBI ID   WP_003181756.1    Uniprot ID   A0A1Y0YKK2
Organism   Bacillus haynesii strain P19     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1304821..1315600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2R00_RS06405 fliH 1304864..1305631 (-) 768 WP_182070688.1 flagellar assembly protein FliH -
  H2R00_RS06410 fliG 1305615..1306631 (-) 1017 WP_182070689.1 flagellar motor switch protein FliG -
  H2R00_RS06415 fliF 1306645..1308246 (-) 1602 WP_154999498.1 flagellar basal-body MS-ring/collar protein FliF -
  H2R00_RS06420 fliE 1308297..1308614 (-) 318 WP_182070690.1 flagellar hook-basal body complex protein FliE -
  H2R00_RS06425 flgC 1308628..1309080 (-) 453 WP_009328519.1 flagellar basal body rod protein FlgC -
  H2R00_RS06430 flgB 1309080..1309469 (-) 390 WP_025804533.1 flagellar basal body rod protein FlgB -
  H2R00_RS06435 codY 1309821..1310600 (-) 780 WP_003181756.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  H2R00_RS06440 hslU 1310639..1312042 (-) 1404 WP_154999499.1 HslU--HslV peptidase ATPase subunit -
  H2R00_RS06445 hslV 1312059..1312604 (-) 546 WP_043928298.1 ATP-dependent protease subunit HslV -
  H2R00_RS06450 xerC 1312619..1313533 (-) 915 WP_182071033.1 tyrosine recombinase XerC -
  H2R00_RS06455 trmFO 1313600..1314904 (-) 1305 WP_182070691.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29073.42 Da        Isoelectric Point: 4.8196

>NTDB_id=470048 H2R00_RS06435 WP_003181756.1 1309821..1310600(-) (codY) [Bacillus haynesii strain P19]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=470048 H2R00_RS06435 WP_003181756.1 1309821..1310600(-) (codY) [Bacillus haynesii strain P19]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGAAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAACTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGACTATACAAAAAGTCTTTTC
AACATTCCGGAAACTTCATCTAACCTTGACATTAACAGCGAATACACGGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACAGTCGTTCCGATCATCGGAGGAGGCGAAAGACTCGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AGTTCGAGGATGACGATCTGATCCTTGCTGAATATGGCGCCACGGTCGTAGGAATGGAAATTCTCAGAGAAAAAGCTGAA
GAGATCGAAGAGGAAGCACGCAGCAAAGCGGTTGTCCAAATGGCGATCAGTTCATTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAAGAGCTTGACGGAAATGAAGGCCTGCTTGTCGCAAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAATGCATTGCGTAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCATTAGGGATGAAAGGCACA
TACATTAAAGTGCTGAACAACAAATTTTTGATGGAATTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YKK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467