Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   H2R00_RS00945 Genome accession   NZ_CP059494
Coordinates   194364..196760 (+) Length   798 a.a.
NCBI ID   WP_182070998.1    Uniprot ID   -
Organism   Bacillus haynesii strain P19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 189364..201760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2R00_RS00925 cymR 190767..191183 (+) 417 WP_023855382.1 cysteine metabolism transcriptional regulator CymR -
  H2R00_RS00930 - 191204..192343 (+) 1140 WP_182070294.1 cysteine desulfurase family protein -
  H2R00_RS00935 mnmA 192449..193567 (+) 1119 WP_182070295.1 tRNA 2-thiouridine(34) synthase MnmA -
  H2R00_RS00940 - 193663..194313 (+) 651 WP_182070296.1 tetratricopeptide repeat protein -
  H2R00_RS00945 recD2 194364..196760 (+) 2397 WP_182070998.1 ATP-dependent RecD-like DNA helicase Machinery gene
  H2R00_RS00950 - 196849..197313 (+) 465 WP_154995772.1 PRC-barrel domain-containing protein -
  H2R00_RS00955 - 197329..197520 (+) 192 WP_003183928.1 hypothetical protein -
  H2R00_RS00960 - 197536..197667 (+) 132 WP_003183926.1 YrzQ family protein -
  H2R00_RS00965 - 197756..198814 (+) 1059 WP_154995770.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89794.41 Da        Isoelectric Point: 4.9464

>NTDB_id=470031 H2R00_RS00945 WP_182070998.1 194364..196760(+) (recD2) [Bacillus haynesii strain P19]
MQRHNPDQIEMEEASFVKGTVTAVIYHNETNLYTVLKVKVEETSESFEDKTVSVTGYFPLIHEDDIYTFYGKTASHPKFG
LQFQADHFKKEVPTTKEGVIQYLASDLFEGIGKKTAEEIVNKLGEGAINKILSDGAVLYDVPKLSKKKADKLAAALQQHQ
GLEQIMISLSEFGFGPQLSMKIYQAYEAETLDKIRENPYQLVKDVEGIGFIKADELGGRMGISGKHEERIKAAILYTVEA
TCLQEGHTYIETRQLIIETQKLLNQSSGDEKVTEMDVADAIISLGEQKELFIEDERCYYPSLYYAEQSFAKRVQKIAGQT
EYDDQFPESEFLLALGELEERMKVQYAPSQKEAIQKALMSPMLLLTGGPGTGKTTVIRGIVELYSELHGLSLNPADYKKD
ETFPFVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHDEDNPIEGRLLIIDETSMLDIWLANQLFKAIPDRIQV
IMVGDEDQLPSVGPGQVLRDLLASNVIASVRLTDIYRQAEGSSIVELAHEMKQGKLPENLTAPTKDRSFIRCRQQQIKEV
VEKVVKNALQKGYSARDIQVLAPMYRGAAGINELNALLQGILNPPKPKGREMKYGDVVYRTGDKVLQLVNQPEHNVFNGD
MGEIVSIFYAKENTEKEDMAVVSFDGNEITFTKKDFNQFTHAYCCSIHKSQGSEFPIVILPIVKSYYRMLRRNLLYTAIT
RSKKFLILCGEEEALEWGVKNKESSERQTSLKRRLLQAAHEEDEELMALQKELPFSVYDANIGMEGITPFDFMEKEAE

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=470031 H2R00_RS00945 WP_182070998.1 194364..196760(+) (recD2) [Bacillus haynesii strain P19]
ATGCAGCGCCATAACCCGGACCAAATTGAAATGGAAGAAGCTTCATTTGTAAAAGGAACGGTAACGGCTGTCATTTATCA
TAATGAAACAAACCTGTATACCGTACTGAAAGTAAAAGTGGAAGAAACATCGGAGTCTTTTGAGGACAAAACCGTTTCTG
TCACTGGTTACTTTCCTTTGATCCATGAAGACGATATCTACACTTTTTACGGAAAGACCGCCTCCCATCCGAAATTTGGC
CTGCAATTTCAAGCGGATCATTTTAAAAAAGAAGTGCCGACAACGAAAGAAGGCGTGATCCAATATTTGGCCAGCGATTT
ATTTGAAGGAATCGGTAAGAAAACGGCCGAGGAAATTGTCAATAAGCTTGGGGAAGGTGCAATCAACAAAATTTTAAGCG
ACGGCGCCGTCTTGTATGATGTCCCGAAGCTCTCCAAAAAAAAGGCGGATAAGCTTGCCGCTGCCCTTCAGCAGCATCAG
GGACTTGAGCAGATTATGATCTCCTTGAGCGAATTCGGCTTCGGCCCCCAGCTATCCATGAAGATTTATCAGGCGTACGA
AGCGGAAACGCTCGATAAAATCCGCGAAAATCCGTACCAGCTTGTCAAAGATGTCGAAGGAATCGGCTTTATCAAGGCGG
ACGAACTGGGCGGCAGGATGGGGATCTCAGGCAAACATGAAGAGCGGATCAAAGCGGCGATTTTATACACGGTTGAAGCG
ACATGCCTTCAAGAAGGGCATACGTACATAGAAACGAGACAGCTCATCATCGAGACGCAAAAACTGTTAAACCAGTCTTC
AGGTGATGAAAAAGTAACCGAGATGGATGTGGCCGACGCGATCATTTCCTTAGGGGAGCAAAAAGAGCTGTTCATTGAAG
ATGAAAGGTGTTATTATCCTTCCCTTTACTACGCTGAACAAAGCTTTGCGAAAAGGGTGCAGAAAATCGCCGGACAGACC
GAATACGATGACCAGTTTCCCGAATCGGAATTCCTGCTCGCTTTAGGGGAGCTTGAAGAACGGATGAAAGTGCAGTACGC
GCCAAGCCAAAAAGAAGCCATTCAAAAAGCGCTGATGTCGCCGATGCTGCTTTTGACAGGCGGACCGGGAACCGGGAAAA
CGACCGTCATCAGGGGAATCGTCGAGTTGTACAGCGAGCTGCACGGCTTAAGCTTGAATCCGGCTGATTACAAAAAGGAT
GAAACGTTTCCGTTTGTACTGGCAGCGCCGACCGGCCGGGCCGCTAAGCGGATGAGCGAGTCGACCGGACTGCCGGCCGT
TACGATTCACAGGCTTCTCGGCTGGAATGGAGCCGAAGGATTTACGCACGATGAAGACAATCCGATTGAAGGGCGGCTGC
TCATTATTGATGAAACGAGCATGCTTGATATATGGCTCGCCAACCAATTGTTCAAGGCGATTCCCGACCGGATACAGGTC
ATCATGGTCGGAGACGAAGACCAGCTTCCGTCTGTCGGTCCCGGACAGGTGCTGAGGGATCTTTTGGCATCGAATGTGAT
TGCTTCTGTCAGACTAACCGATATTTACAGGCAGGCTGAAGGCTCTTCAATCGTTGAACTGGCGCATGAAATGAAACAAG
GAAAGCTTCCGGAAAACTTGACCGCGCCGACAAAAGACCGTTCTTTCATTCGCTGCCGCCAGCAGCAGATTAAAGAAGTC
GTCGAAAAAGTCGTTAAAAACGCGCTGCAAAAAGGATATTCGGCCAGAGATATTCAGGTTTTGGCTCCGATGTATAGAGG
AGCGGCCGGCATCAATGAGTTAAACGCGCTTTTGCAGGGCATCCTGAATCCGCCAAAGCCGAAAGGCAGGGAAATGAAGT
ACGGCGATGTCGTGTACCGTACCGGAGATAAAGTGCTCCAGCTCGTCAACCAGCCGGAGCACAACGTGTTTAACGGTGAT
ATGGGTGAGATCGTTTCGATTTTTTATGCAAAAGAAAATACGGAAAAAGAAGACATGGCCGTCGTCTCTTTCGACGGGAA
TGAAATCACGTTTACAAAAAAAGATTTCAACCAATTTACGCACGCCTATTGCTGTTCGATCCACAAATCGCAAGGCAGCG
AATTTCCGATCGTCATCCTTCCGATCGTCAAAAGCTATTACCGGATGCTGAGAAGGAACTTGCTTTACACGGCCATCACA
AGAAGCAAAAAATTCCTGATTCTGTGCGGTGAAGAAGAAGCCCTTGAATGGGGCGTGAAAAATAAGGAATCATCAGAAAG
GCAGACATCGCTTAAAAGAAGGCTTCTGCAGGCGGCACATGAAGAGGATGAAGAGCTCATGGCGCTTCAAAAAGAGCTGC
CTTTCAGCGTCTATGACGCCAATATCGGGATGGAAGGCATTACACCTTTTGATTTTATGGAAAAGGAAGCAGAATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

AAA domain (AAA_30)

(346-554)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-662)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

81.602

100

0.817