Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   H2R00_RS00870 Genome accession   NZ_CP059494
Coordinates   176649..178997 (+) Length   782 a.a.
NCBI ID   WP_154995797.1    Uniprot ID   -
Organism   Bacillus haynesii strain P19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 171649..183997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2R00_RS00850 spoVB 171906..173459 (-) 1554 WP_154995803.1 stage V sporulation protein B -
  H2R00_RS00855 - 173577..173873 (+) 297 WP_043925422.1 post-transcriptional regulator -
  H2R00_RS00860 secDF 173910..176135 (+) 2226 WP_154995801.1 protein translocase subunit SecDF -
  H2R00_RS00865 - 176284..176577 (+) 294 WP_154995799.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  H2R00_RS00870 recJ 176649..178997 (+) 2349 WP_154995797.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  H2R00_RS00875 - 179015..179527 (+) 513 WP_154995795.1 adenine phosphoribosyltransferase -
  H2R00_RS00880 - 179697..181898 (+) 2202 WP_154995793.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  H2R00_RS00885 dtd 181912..182355 (+) 444 WP_154995791.1 D-aminoacyl-tRNA deacylase -
  H2R00_RS00890 - 182385..183956 (-) 1572 WP_182070291.1 SH3 domain-containing protein -

Sequence

Protein


Download         Length: 782 a.a.        Molecular weight: 87687.41 Da        Isoelectric Point: 4.8877

>NTDB_id=470030 H2R00_RS00870 WP_154995797.1 176649..178997(+) (recJ) [Bacillus haynesii strain P19]
MLASKMRWDVQTPDKEKVEQLAGRLGITPLAASLLVMRGYDTADKASSFLYGKDAVFHDPYLLKDMEKAVRRIKQAILDQ
EKIMIYGDYDADGVTSTTVLLQMLKKCSAQADFYIPDRFKEGYGPNEAAFRGIKESGYSLIITVDTGIAAVHEAEVAKEL
GVDLIITDHHEPGPVLPDAYAIIHPKQPGCGYPFKELAGVGVAFKLAHALNGELPEDLLDLCAIGTIADLVPLHDENRQI
AKRGMEQFRKTKRPGLKALTKIAGAEIHSADEETIGFQIAPRLNAVGRIEQADPAVYLLNTEDETEAEELAEDINALNKE
RQKIVNQMTEEAVQMIEEEGLDQPVIVAARPGWNPGVVGIVASKLVERFYRPAIVLGIDEEKGIAKGSARSIKGFDLFQN
LSECRDILPHFGGHPMAAGMTLNLEDVSALRERINRQAEAVLTEEDFIPVQDIDLCCRLEDITVDSIAEMNMLAPFGTGN
PKPFVLVSDVKIDDARKIGANKNHLKLVLADGENKLDCIGFYKGAIEEGIVPGAKISIVGELSINEWNNRKKPQLMIKDA
AVNEWQLFDLRGKRSWEEKILQLDPAKRACICFREETKAKLAGTGLEEELTVISGPEDAERLDLENRYAVFIDIPQSLDI
FDHLIKGKKLERIYLIFNQSDEHFFSTFPTREYFKWYYAFLLKRGSFDLPKYGGELARHKGWTKDTIDFMTKVFFELGFV
TIENGVLSVVYHAEKRDLTDSETYREKQRLIELEQKLIYSSADELKQWLDKRMAENAGAYKV

Nucleotide


Download         Length: 2349 bp        

>NTDB_id=470030 H2R00_RS00870 WP_154995797.1 176649..178997(+) (recJ) [Bacillus haynesii strain P19]
ATGTTAGCGTCAAAAATGCGTTGGGACGTGCAAACGCCCGACAAAGAAAAGGTGGAGCAGCTCGCCGGAAGGTTAGGCAT
TACTCCCCTTGCCGCCTCATTGCTTGTCATGAGAGGTTACGATACAGCCGACAAAGCATCTTCATTTTTATATGGCAAGG
ATGCTGTTTTTCACGATCCTTATCTGCTGAAAGATATGGAAAAAGCTGTACGGCGAATCAAACAGGCAATTTTAGATCAA
GAAAAGATTATGATTTACGGCGATTATGATGCGGACGGTGTGACAAGCACGACTGTCCTTTTACAAATGTTGAAAAAATG
TTCAGCACAAGCCGATTTTTATATACCTGACCGCTTTAAAGAAGGGTACGGCCCGAATGAAGCGGCCTTTCGCGGGATCA
AAGAATCAGGCTATTCATTGATCATCACAGTGGACACAGGCATTGCTGCCGTTCATGAAGCTGAAGTCGCCAAAGAGCTT
GGCGTCGATCTGATCATTACGGATCACCATGAGCCGGGTCCTGTTTTGCCGGATGCTTATGCGATCATTCATCCGAAACA
GCCGGGCTGCGGCTATCCATTTAAAGAGCTTGCCGGCGTCGGTGTGGCATTTAAGCTTGCCCATGCCTTGAACGGAGAGC
TCCCGGAAGATTTGCTCGACCTTTGTGCGATCGGCACGATTGCCGACCTTGTGCCGCTTCATGATGAAAACAGGCAGATT
GCCAAGCGCGGCATGGAACAGTTCAGGAAAACGAAGCGCCCCGGATTAAAAGCGCTGACCAAAATTGCCGGAGCGGAGAT
ACATAGTGCGGATGAAGAGACCATCGGTTTTCAAATCGCGCCCCGCTTAAACGCGGTCGGCAGAATTGAACAGGCTGACC
CGGCCGTTTACCTTCTGAACACAGAAGATGAAACAGAAGCGGAAGAGCTTGCTGAAGACATCAACGCCTTGAACAAGGAG
CGCCAAAAAATCGTCAATCAGATGACAGAGGAAGCCGTTCAGATGATCGAGGAGGAAGGCCTTGACCAGCCGGTGATCGT
CGCGGCGCGGCCGGGCTGGAACCCGGGCGTCGTTGGAATCGTGGCTTCAAAGCTTGTCGAGCGGTTTTACAGGCCCGCGA
TCGTCCTCGGCATCGATGAAGAAAAAGGCATCGCCAAAGGATCTGCGCGCAGCATCAAGGGATTTGATTTATTTCAAAAC
CTTTCAGAGTGCCGGGATATACTCCCGCACTTCGGCGGCCACCCGATGGCAGCCGGAATGACGCTCAATCTGGAAGATGT
TTCGGCTCTAAGGGAGAGAATCAACCGTCAGGCTGAAGCGGTTCTGACCGAGGAAGATTTTATTCCTGTCCAAGACATCG
ATTTGTGCTGCCGGCTCGAAGATATAACGGTTGACAGCATTGCCGAAATGAATATGCTGGCGCCGTTCGGCACGGGAAAC
CCGAAGCCGTTCGTTCTTGTCAGCGACGTTAAAATTGACGATGCCAGGAAAATCGGCGCCAATAAGAATCACTTGAAGCT
TGTCCTGGCAGACGGCGAGAACAAGCTCGATTGCATCGGATTTTATAAAGGCGCTATCGAAGAAGGAATCGTTCCTGGAG
CAAAGATCTCGATTGTCGGGGAACTGTCGATTAACGAGTGGAACAACAGAAAAAAACCGCAGCTGATGATCAAAGATGCG
GCCGTCAATGAATGGCAGCTGTTTGATCTGCGGGGAAAACGGTCATGGGAAGAAAAAATATTGCAGCTGGACCCTGCAAA
ACGGGCGTGCATCTGCTTCCGCGAGGAAACAAAAGCGAAGCTGGCAGGGACAGGTCTTGAAGAAGAGCTGACCGTCATCA
GCGGCCCTGAAGATGCAGAGCGTCTCGACCTTGAGAACCGCTATGCGGTATTTATAGATATTCCCCAGTCGCTCGACATT
TTTGATCATCTAATAAAAGGCAAAAAACTGGAGCGCATTTATCTGATTTTTAATCAATCAGACGAACATTTTTTCTCAAC
ATTTCCAACAAGGGAATATTTTAAATGGTACTATGCTTTCCTCCTGAAAAGAGGCTCTTTTGACTTGCCGAAATATGGCG
GAGAGCTTGCCAGACATAAAGGCTGGACAAAAGACACAATTGATTTTATGACAAAGGTGTTTTTTGAGCTCGGTTTTGTT
ACAATAGAGAATGGTGTTTTATCTGTTGTTTATCATGCCGAAAAGCGCGATCTAACAGATTCTGAAACCTACCGGGAAAA
ACAGCGCCTGATTGAATTGGAGCAAAAGCTCATTTATTCTTCGGCGGATGAGCTTAAACAGTGGCTGGATAAGCGGATGG
CGGAAAACGCCGGCGCTTATAAAGTATGA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHHA1 domain (DHHA1)

(315-436)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(453-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

69.142

99.872

0.691