Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   H1D55_RS10575 Genome accession   NZ_CP059474
Coordinates   2264985..2265626 (-) Length   213 a.a.
NCBI ID   WP_042051785.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain M175-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2259985..2270626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D55_RS10555 aroK 2260901..2261470 (-) 570 WP_000643712.1 shikimate kinase AroK -
  H1D55_RS10560 pilQ 2261482..2263647 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  H1D55_RS10565 pilP 2263710..2264237 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  H1D55_RS10570 pilO 2264248..2264988 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  H1D55_RS10575 pilN 2264985..2265626 (-) 642 WP_042051785.1 PilN domain-containing protein Machinery gene
  H1D55_RS10580 pilM 2265626..2266684 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  H1D55_RS10585 ponA 2266845..2269400 (+) 2556 WP_000736672.1 penicillin-binding protein PBP1a -
  H1D55_RS10590 - 2269418..2270242 (-) 825 WP_001990541.1 putative RNA methyltransferase -
  H1D55_RS10595 - 2270245..2270577 (-) 333 WP_000169602.1 DUF7709 family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23989.33 Da        Isoelectric Point: 5.3968

>NTDB_id=469930 H1D55_RS10575 WP_042051785.1 2264985..2265626(-) (pilN) [Acinetobacter baumannii strain M175-3]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSAGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=469930 H1D55_RS10575 WP_042051785.1 2264985..2265626(-) (pilN) [Acinetobacter baumannii strain M175-3]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTGCTGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

71.77

98.122

0.704