Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   H1R16_RS04615 Genome accession   NZ_CP059472
Coordinates   1016559..1017212 (+) Length   217 a.a.
NCBI ID   WP_181887637.1    Uniprot ID   A0A7D7LRS6
Organism   Marnyiella aurantia strain CX-624     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1011559..1022212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1R16_RS04585 (H1R16_04585) - 1011990..1012724 (-) 735 WP_181887631.1 DUF4230 domain-containing protein -
  H1R16_RS04590 (H1R16_04590) - 1012805..1013344 (-) 540 WP_181887632.1 hypothetical protein -
  H1R16_RS04595 (H1R16_04595) - 1013359..1014402 (-) 1044 WP_181887633.1 acyl transferase -
  H1R16_RS04600 (H1R16_04600) - 1014537..1014917 (-) 381 WP_181887634.1 GxxExxY protein -
  H1R16_RS04605 (H1R16_04605) - 1014904..1015728 (-) 825 WP_181887635.1 UDP-2,3-diacylglucosamine diphosphatase -
  H1R16_RS04610 (H1R16_04610) - 1016009..1016458 (-) 450 WP_181887636.1 6-carboxytetrahydropterin synthase -
  H1R16_RS04615 (H1R16_04615) comF 1016559..1017212 (+) 654 WP_181887637.1 ComF family protein Machinery gene
  H1R16_RS04620 (H1R16_04620) upp 1017229..1017879 (-) 651 WP_181887638.1 uracil phosphoribosyltransferase -
  H1R16_RS04625 (H1R16_04625) - 1017973..1018293 (-) 321 WP_181887639.1 four helix bundle protein -
  H1R16_RS04630 (H1R16_04630) der 1018346..1019656 (-) 1311 WP_181887640.1 ribosome biogenesis GTPase Der -
  H1R16_RS04635 (H1R16_04635) - 1019795..1020274 (+) 480 WP_181887641.1 heme-binding domain-containing protein -
  H1R16_RS04640 (H1R16_04640) - 1020277..1020687 (+) 411 WP_181887642.1 thiol-disulfide oxidoreductase DCC family protein -
  H1R16_RS04645 (H1R16_04645) - 1020744..1021394 (+) 651 WP_181887643.1 DUF4290 domain-containing protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 24740.68 Da        Isoelectric Point: 7.4614

>NTDB_id=469866 H1R16_RS04615 WP_181887637.1 1016559..1017212(+) (comF) [Marnyiella aurantia strain CX-624]
MLPDLLFPNRCLQCNRIIAAQELVCGICIEQVNFTHQEFTTPNSLTERCSLLFPVKHAFALMQFEEDSLSRKIVHQLKYG
KREIVGKVLAGWVCERLDFADDAPDLIITVPLHPKKLRERGYNQLHLFTETLAAHFNIAFDHQLVKRNHYLKAQAKKDKL
HRTGTEGLFSVTKTIENRHLLIIDDVFTTGNTMSSVAWEILKAGNNTVSVLVMAVDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=469866 H1R16_RS04615 WP_181887637.1 1016559..1017212(+) (comF) [Marnyiella aurantia strain CX-624]
ATGCTGCCTGACCTGCTTTTTCCCAACCGCTGCCTTCAGTGCAACAGAATTATTGCTGCACAGGAGCTGGTTTGCGGCAT
TTGCATAGAGCAGGTAAATTTCACACATCAGGAATTCACAACACCTAATTCCCTCACCGAAAGATGCAGCCTGCTCTTCC
CTGTAAAACATGCTTTCGCCCTGATGCAGTTTGAAGAGGACAGCCTGAGCCGGAAAATCGTACATCAGCTGAAGTATGGC
AAGCGGGAAATAGTAGGAAAAGTTTTAGCCGGCTGGGTGTGTGAACGTCTGGATTTTGCTGATGATGCGCCGGATCTGAT
CATTACAGTGCCTTTACATCCAAAAAAACTTCGTGAACGCGGTTATAATCAGCTTCATCTTTTCACCGAGACGCTGGCAG
CGCACTTCAACATTGCCTTTGATCATCAACTTGTAAAACGTAACCATTACCTTAAGGCTCAGGCCAAAAAAGACAAGTTG
CACCGCACCGGCACAGAAGGTTTATTTTCCGTTACGAAAACAATTGAAAACAGACACCTGCTGATCATTGACGATGTATT
TACAACCGGCAATACCATGAGTTCGGTAGCCTGGGAAATCCTGAAAGCCGGTAATAACACCGTTTCAGTTCTTGTAATGG
CTGTTGATGAGTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(4-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D7LRS6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

51.613

100

0.516