Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   H1R75_RS04035 Genome accession   NZ_CP059471
Coordinates   747417..748280 (+) Length   287 a.a.
NCBI ID   WP_182001729.1    Uniprot ID   -
Organism   Streptococcus equinus strain MDC1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 742417..753280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1R75_RS04005 (H1R75_04005) - 742635..743510 (+) 876 WP_004231084.1 F0F1 ATP synthase subunit gamma -
  H1R75_RS04010 (H1R75_04010) atpD 743576..744982 (+) 1407 WP_024344335.1 F0F1 ATP synthase subunit beta -
  H1R75_RS04015 (H1R75_04015) - 744995..745411 (+) 417 WP_021142000.1 F0F1 ATP synthase subunit epsilon -
  H1R75_RS04020 (H1R75_04020) - 745553..745789 (+) 237 WP_021142001.1 DUF1146 family protein -
  H1R75_RS04025 (H1R75_04025) murA 745852..747126 (+) 1275 WP_021142002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  H1R75_RS04030 (H1R75_04030) - 747129..747317 (+) 189 WP_024344337.1 DNA-directed RNA polymerase subunit beta -
  H1R75_RS04035 (H1R75_04035) endA 747417..748280 (+) 864 WP_182001729.1 DNA/RNA non-specific endonuclease Machinery gene
  H1R75_RS04040 (H1R75_04040) pheS 748569..749612 (+) 1044 WP_027967999.1 phenylalanine--tRNA ligase subunit alpha -
  H1R75_RS04045 (H1R75_04045) - 749644..750168 (+) 525 WP_021142007.1 GNAT family N-acetyltransferase -
  H1R75_RS04050 (H1R75_04050) pheT 750238..752643 (+) 2406 WP_024344340.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 30537.68 Da        Isoelectric Point: 8.2963

>NTDB_id=469824 H1R75_RS04035 WP_182001729.1 747417..748280(+) (endA) [Streptococcus equinus strain MDC1]
MAKKSNLSKKTKSIISLLVLLVGIGTGWVTTSDSSDPVSQVLSLVTGESSSVASNHSSANESAPSQELAESVLTDNVKAQ
LGSTIEWNGAGAYLVNGNKTSLNAKVASKPYANNKTKVVQGQSVPTVANALLSKSTRQYRSREETGNGSTSWTPAGWHQV
QNLSGTYSHAVDRGHLLGYALVGGLKGFDASTSNPENVATQTAWANEARSEDSTGQNYYEGLVRRALDQNKRVRYRVTLI
YDGDNILASGTHLEAKSSDGSLEFNVFVPNVQSGLTIDYYSGQVSVN

Nucleotide


Download         Length: 864 bp        

>NTDB_id=469824 H1R75_RS04035 WP_182001729.1 747417..748280(+) (endA) [Streptococcus equinus strain MDC1]
ATGGCAAAAAAATCAAATCTGTCTAAAAAGACAAAATCAATTATCTCTTTACTGGTTTTATTAGTTGGTATTGGAACAGG
ATGGGTAACGACATCTGATTCTAGTGACCCAGTCAGTCAAGTTTTATCCCTTGTTACGGGAGAATCATCATCGGTTGCTT
CAAATCATTCAAGTGCTAATGAATCAGCACCAAGTCAGGAATTGGCTGAGTCAGTTTTAACTGATAATGTTAAAGCACAA
TTAGGCTCAACTATTGAATGGAATGGAGCAGGGGCTTATCTTGTAAATGGAAATAAAACCTCTTTGAATGCAAAGGTTGC
AAGCAAACCTTATGCCAATAATAAGACGAAAGTTGTACAAGGACAGTCAGTTCCGACAGTTGCTAACGCACTTTTGAGTA
AGTCAACCCGTCAATACCGAAGCCGTGAGGAAACAGGTAATGGCTCAACCTCTTGGACGCCAGCTGGTTGGCATCAAGTA
CAAAATCTATCTGGAACTTATAGCCATGCGGTTGATCGTGGGCATTTGCTTGGATACGCTTTGGTTGGTGGGCTAAAAGG
TTTTGATGCCTCAACAAGTAACCCTGAAAATGTTGCTACTCAGACAGCTTGGGCAAATGAGGCTAGATCAGAAGATTCAA
CAGGACAGAATTACTATGAAGGGCTTGTCCGTCGAGCACTTGATCAGAATAAACGCGTTCGTTATCGTGTGACTTTGATT
TATGATGGGGACAATATTTTAGCTAGTGGAACACATTTAGAAGCAAAATCATCTGACGGTAGCTTAGAGTTTAATGTCTT
TGTTCCAAATGTTCAAAGTGGACTTACGATTGACTATTATTCTGGTCAGGTTAGTGTGAATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(95-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

72

78.397

0.564
  endA Streptococcus pneumoniae D39

72

78.397

0.564
  endA Streptococcus pneumoniae R6

72

78.397

0.564
  endA Streptococcus pneumoniae TIGR4

72

78.397

0.564