Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   H1R75_RS02205 Genome accession   NZ_CP059471
Coordinates   395902..396834 (+) Length   310 a.a.
NCBI ID   WP_003067560.1    Uniprot ID   A0A1G9P2J7
Organism   Streptococcus equinus strain MDC1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 390902..401834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1R75_RS02185 (H1R75_02185) - 391124..392776 (+) 1653 WP_182001581.1 peptide ABC transporter substrate-binding protein -
  H1R75_RS02190 (H1R75_02190) - 392888..393802 (+) 915 WP_021141673.1 ABC transporter permease -
  H1R75_RS02195 (H1R75_02195) - 393814..394845 (+) 1032 WP_182001582.1 ABC transporter permease -
  H1R75_RS02200 (H1R75_02200) - 394857..395902 (+) 1046 Protein_376 ABC transporter ATP-binding protein -
  H1R75_RS02205 (H1R75_02205) amiF 395902..396834 (+) 933 WP_003067560.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 310 a.a.        Molecular weight: 35035.81 Da        Isoelectric Point: 5.6591

>NTDB_id=469810 H1R75_RS02205 WP_003067560.1 395902..396834(+) (amiF) [Streptococcus equinus strain MDC1]
MTENRKKLVELKNVSLTFNEGKKNEVKAINNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINGGEIDFDGETVSNL
KGKELHEFRKNVQMIFQDPQASLNGRMKIRDIVAEGLDIHKLVNSKEERDEKVQELLSLVGLNKDHMTRYPHEFSGGQRQ
RIGIARALAVQPKFIIADEPISALDVSIQAQVVNLMQKLQRERGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDD
VYNNPIHPYTKSLLSAIPEPDPESERGRVHQVYDPTAELDGQEREMREITPGHFVLSTEAEAEEYKKALQ

Nucleotide


Download         Length: 933 bp        

>NTDB_id=469810 H1R75_RS02205 WP_003067560.1 395902..396834(+) (amiF) [Streptococcus equinus strain MDC1]
ATGACTGAAAATAGAAAAAAGCTTGTTGAACTTAAAAATGTATCTTTGACCTTCAACGAAGGTAAAAAGAACGAAGTAAA
AGCAATCAACAACGTTAGCTTTGACATCTACGAAGGTGAAGTATTTGGTCTAGTTGGTGAATCAGGTTCTGGTAAAACAA
CTGTTGGACGTGCTATCTTGAAACTTTATGATATCAATGGTGGAGAAATTGATTTTGATGGTGAAACAGTTTCTAACCTT
AAAGGTAAAGAATTGCACGAATTCCGTAAAAATGTCCAAATGATTTTCCAAGACCCTCAAGCAAGTCTTAATGGTCGTAT
GAAAATTCGTGACATTGTTGCAGAAGGTCTTGATATTCATAAATTAGTTAATAGTAAAGAAGAACGTGATGAAAAAGTTC
AAGAATTACTATCATTAGTTGGTTTGAACAAAGATCACATGACTCGTTACCCACATGAATTTTCAGGTGGTCAACGTCAA
CGTATCGGTATTGCTCGAGCACTTGCAGTTCAACCAAAATTTATCATTGCTGATGAACCAATTTCAGCCCTTGACGTATC
AATCCAAGCTCAAGTTGTAAACTTGATGCAAAAACTTCAACGTGAACGTGGTTTAACATACTTGTTCATCGCTCACGATT
TGTCTATGGTGAAATACATTTCTGACCGTATCGGTGTTATGCACTGGGGTAAAATGCTTGAAATTGGAACATCTGATGAT
GTTTACAATAATCCAATCCACCCATACACTAAGAGTCTGTTGTCTGCTATTCCTGAACCAGACCCAGAATCTGAACGTGG
ACGTGTACACCAAGTGTATGATCCTACTGCAGAGCTTGATGGCCAAGAACGTGAAATGCGAGAAATTACTCCAGGACACT
TTGTACTTTCAACAGAAGCAGAAGCAGAAGAATACAAAAAAGCATTACAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-265)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1G9P2J7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

56.25

98.065

0.552
  amiF Streptococcus thermophilus LMG 18311

55.921

98.065

0.548
  amiF Streptococcus salivarius strain HSISS4

55.592

98.065

0.545