Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HPIN_RS03740 Genome accession   NC_017372
Coordinates   796299..796583 (-) Length   94 a.a.
NCBI ID   WP_000736106.1    Uniprot ID   T0F3N0
Organism   Helicobacter pylori India7     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 791299..801583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPIN_RS03715 (HPIN_03865) - 791903..793072 (-) 1170 WP_000067671.1 type IV secretion system protein -
  HPIN_RS03720 (HPIN_03870) - 793065..793199 (-) 135 WP_000738747.1 hypothetical protein -
  HPIN_RS03725 (HPIN_03875) - 793196..795778 (-) 2583 WP_000462622.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  HPIN_RS03730 (HPIN_03880) - 795778..796014 (-) 237 WP_001183709.1 hypothetical protein -
  HPIN_RS03735 (HPIN_03885) comB3 796025..796288 (-) 264 WP_001177712.1 hypothetical protein Machinery gene
  HPIN_RS03740 (HPIN_03890) comB2 796299..796583 (-) 285 WP_000736106.1 TrbC/VirB2 family protein Machinery gene
  HPIN_RS03745 (HPIN_03895) - 796580..797059 (-) 480 WP_000571127.1 hypothetical protein -
  HPIN_RS03750 (HPIN_03900) - 797163..797951 (-) 789 WP_001140590.1 hypothetical protein -
  HPIN_RS03755 (HPIN_03905) - 797938..798834 (-) 897 Protein_738 DEAD/DEAH box helicase family protein -
  HPIN_RS03760 (HPIN_03910) - 798989..799549 (-) 561 WP_000388041.1 2-oxoacid:acceptor oxidoreductase family protein -
  HPIN_RS03765 (HPIN_03915) - 799549..800370 (-) 822 WP_000885320.1 2-oxoglutarate ferredoxin oxidoreductase subunit beta -
  HPIN_RS03770 (HPIN_03920) - 800372..801499 (-) 1128 WP_001206896.1 2-oxoglutarate synthase subunit alpha -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10752.11 Da        Isoelectric Point: 11.1589

>NTDB_id=46964 HPIN_RS03740 WP_000736106.1 796299..796583(-) (comB2) [Helicobacter pylori India7]
MKKLRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=46964 HPIN_RS03740 WP_000736106.1 796299..796583(-) (comB2) [Helicobacter pylori India7]
ATGAAAAAATTAAGGCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGCATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTCATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.778

95.745

0.553

Multiple sequence alignment