Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   H1Q60_RS18465 Genome accession   NZ_CP059405
Coordinates   3611257..3612036 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain MV2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3606257..3617036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1Q60_RS18445 (H1Q60_18445) trmFO 3606944..3608251 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  H1Q60_RS18450 (H1Q60_18450) xerC 3608321..3609238 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  H1Q60_RS18455 (H1Q60_18455) hslV 3609254..3609799 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  H1Q60_RS18460 (H1Q60_18460) hslU 3609807..3611219 (+) 1413 WP_255247556.1 HslU--HslV peptidase ATPase subunit -
  H1Q60_RS18465 (H1Q60_18465) codY 3611257..3612036 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  H1Q60_RS18470 (H1Q60_18470) flgB 3612390..3612779 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  H1Q60_RS18475 (H1Q60_18475) flgC 3612779..3613231 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  H1Q60_RS18480 (H1Q60_18480) fliE 3613242..3613562 (+) 321 WP_025649464.1 flagellar hook-basal body complex protein FliE -
  H1Q60_RS18485 (H1Q60_18485) fliF 3613605..3615215 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  H1Q60_RS18490 (H1Q60_18490) fliG 3615228..3616244 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  H1Q60_RS18495 (H1Q60_18495) fliH 3616237..3616992 (+) 756 WP_063636636.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=469471 H1Q60_RS18465 WP_003154263.1 3611257..3612036(+) (codY) [Bacillus velezensis strain MV2]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=469471 H1Q60_RS18465 WP_003154263.1 3611257..3612036(+) (codY) [Bacillus velezensis strain MV2]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTAATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471