Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HPF57_RS00095 Genome accession   NC_017367
Coordinates   13796..14077 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori F57     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8796..19077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPF57_RS00075 (HPF57_0009) groES 9376..9732 (-) 357 WP_000671959.1 co-chaperone GroES -
  HPF57_RS00080 (HPF57_0010) dnaG 10005..11684 (+) 1680 WP_000601514.1 DNA primase -
  HPF57_RS00085 (HPF57_0011) - 11681..12733 (+) 1053 WP_000721157.1 MnmA/TRMU family protein -
  HPF57_RS00090 (HPF57_0012) - 12824..13651 (+) 828 WP_001154886.1 DUF5718 family protein -
  HPF57_RS00095 (HPF57_0013) comB2 13796..14077 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HPF57_RS00100 (HPF57_0014) comB3 14077..14340 (+) 264 WP_000584955.1 hypothetical protein Machinery gene
  HPF57_RS00105 (HPF57_0015) comB4 14342..16705 (+) 2364 WP_000890555.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPF57_RS00110 (HPF57_0016) - 17026..18366 (+) 1341 WP_014535491.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=46886 HPF57_RS00095 WP_001272686.1 13796..14077(+) (comB2) [Helicobacter pylori F57]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=46886 HPF57_RS00095 WP_001272686.1 13796..14077(+) (comB2) [Helicobacter pylori F57]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment