Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HPF32_RS00090 Genome accession   NC_017366
Coordinates   13543..13824 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori F32     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8543..18824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPF32_RS00070 (HPF32_0009) groES 9123..9479 (-) 357 WP_000671950.1 co-chaperone GroES -
  HPF32_RS00075 (HPF32_0010) dnaG 9753..11432 (+) 1680 WP_000601549.1 DNA primase -
  HPF32_RS00080 (HPF32_0011) - 11429..12481 (+) 1053 WP_000802567.1 MnmA/TRMU family protein -
  HPF32_RS00085 (HPF32_0012) - 12571..13398 (+) 828 WP_001154868.1 DUF5718 family protein -
  HPF32_RS00090 (HPF32_0013) comB2 13543..13824 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HPF32_RS00095 (HPF32_0014) comB3 13824..14087 (+) 264 WP_000584956.1 hypothetical protein Machinery gene
  HPF32_RS00100 (HPF32_0015) comB4 14089..16452 (+) 2364 WP_000890523.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPF32_RS00105 (HPF32_0016) - 16773..18113 (+) 1341 WP_014535302.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=46863 HPF32_RS00090 WP_001272686.1 13543..13824(+) (comB2) [Helicobacter pylori F32]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=46863 HPF32_RS00090 WP_001272686.1 13543..13824(+) (comB2) [Helicobacter pylori F32]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGCTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAGGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment