Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   HZT45_RS08080 Genome accession   NZ_CP059318
Coordinates   1614215..1614994 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain BIOMA BV10     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1609215..1619994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZT45_RS08060 (HZT45_08060) trmFO 1609902..1611209 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  HZT45_RS08065 (HZT45_08065) xerC 1611279..1612196 (+) 918 WP_052827418.1 tyrosine recombinase XerC -
  HZT45_RS08070 (HZT45_08070) hslV 1612212..1612757 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  HZT45_RS08075 (HZT45_08075) hslU 1612774..1614177 (+) 1404 WP_007409775.1 HslU--HslV peptidase ATPase subunit -
  HZT45_RS08080 (HZT45_08080) codY 1614215..1614994 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  HZT45_RS08085 (HZT45_08085) flgB 1615348..1615737 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  HZT45_RS08090 (HZT45_08090) flgC 1615737..1616189 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  HZT45_RS08095 (HZT45_08095) fliE 1616200..1616520 (+) 321 WP_052827419.1 flagellar hook-basal body complex protein FliE -
  HZT45_RS08100 (HZT45_08100) fliF 1616563..1618173 (+) 1611 WP_052827420.1 flagellar basal-body MS-ring/collar protein FliF -
  HZT45_RS08105 (HZT45_08105) fliG 1618186..1619202 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  HZT45_RS08110 (HZT45_08110) fliH 1619195..1619950 (+) 756 WP_052827421.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=468519 HZT45_RS08080 WP_003154263.1 1614215..1614994(+) (codY) [Bacillus velezensis strain BIOMA BV10]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=468519 HZT45_RS08080 WP_003154263.1 1614215..1614994(+) (codY) [Bacillus velezensis strain BIOMA BV10]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATCGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471