Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPF30_RS00100 Genome accession   NC_017365
Coordinates   13886..14149 (+) Length   87 a.a.
NCBI ID   WP_000636520.1    Uniprot ID   -
Organism   Helicobacter pylori F30     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8886..19149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPF30_RS00075 (HPF30_0009) groES 9184..9540 (-) 357 WP_000671954.1 co-chaperone GroES -
  HPF30_RS00080 (HPF30_0010) dnaG 9815..11494 (+) 1680 WP_000601613.1 DNA primase -
  HPF30_RS00085 (HPF30_0011) - 11491..12543 (+) 1053 WP_000802575.1 MnmA/TRMU family protein -
  HPF30_RS00090 (HPF30_0012) - 12632..13459 (+) 828 WP_001154890.1 DUF5718 family protein -
  HPF30_RS00095 (HPF30_0013) comB2 13605..13886 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HPF30_RS00100 (HPF30_0014) comB3 13886..14149 (+) 264 WP_000636520.1 hypothetical protein Machinery gene
  HPF30_RS00105 (HPF30_0015) comB4 14152..16515 (+) 2364 WP_000890519.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPF30_RS00110 (HPF30_0016) - 16836..18176 (+) 1341 WP_001868560.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10062.15 Da        Isoelectric Point: 9.5507

>NTDB_id=46843 HPF30_RS00100 WP_000636520.1 13886..14149(+) (comB3) [Helicobacter pylori F30]
MIVLSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=46843 HPF30_RS00100 WP_000636520.1 13886..14149(+) (comB3) [Helicobacter pylori F30]
ATGATTGTCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCCAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

95.402

100

0.954

Multiple sequence alignment