Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   I6J80_RS07060 Genome accession   NZ_CP069571
Coordinates   1384048..1384812 (-) Length   254 a.a.
NCBI ID   WP_001136236.1    Uniprot ID   A7ZT17
Organism   Escherichia coli strain FDAARGOS_1250     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1379048..1389812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J80_RS07050 (I6J80_07050) nikR 1382838..1383239 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  I6J80_RS07055 (I6J80_07055) nikE 1383245..1384051 (-) 807 WP_000173665.1 nickel import ATP-binding protein NikE -
  I6J80_RS07060 (I6J80_07060) amiE 1384048..1384812 (-) 765 WP_001136236.1 nickel import ATP-binding protein NikD Regulator
  I6J80_RS07065 (I6J80_07065) nikC 1384812..1385645 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  I6J80_RS07070 (I6J80_07070) nikB 1385642..1386586 (-) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  I6J80_RS07075 (I6J80_07075) nikA 1386586..1388160 (-) 1575 WP_000953348.1 nickel ABC transporter substrate-binding protein -
  I6J80_RS07080 (I6J80_07080) acpT 1388271..1388858 (-) 588 WP_000285773.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26833.42 Da        Isoelectric Point: 6.5992

>NTDB_id=468396 I6J80_RS07060 WP_001136236.1 1384048..1384812(-) (amiE) [Escherichia coli strain FDAARGOS_1250]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSQGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=468396 I6J80_RS07060 WP_001136236.1 1384048..1384812(-) (amiE) [Escherichia coli strain FDAARGOS_1250]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTACACGGTGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCGACGCTGGGCATTTTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTCACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACAAGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACGGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZT17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398