Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   H0529_RS06440 Genome accession   NZ_CP059300
Coordinates   1345505..1345885 (-) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AC1633     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1340505..1350885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0529_RS06410 (H0529_06410) tadA 1340624..1341127 (-) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  H0529_RS06415 (H0529_06415) - 1341134..1342258 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  H0529_RS06420 (H0529_06420) ung 1342255..1342968 (-) 714 WP_001177530.1 uracil-DNA glycosylase -
  H0529_RS06425 (H0529_06425) - 1343019..1343615 (-) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  H0529_RS06430 (H0529_06430) gspK 1343845..1344804 (-) 960 WP_000301464.1 type II secretion system minor pseudopilin GspK -
  H0529_RS06435 (H0529_06435) xcpW 1344804..1345505 (-) 702 WP_000594576.1 type II secretion system minor pseudopilin GspJ Machinery gene
  H0529_RS06440 (H0529_06440) xcpV 1345505..1345885 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  H0529_RS06445 (H0529_06445) - 1345875..1346429 (-) 555 WP_000841373.1 type II secretion system protein -
  H0529_RS06450 (H0529_06450) - 1346439..1347047 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  H0529_RS06455 (H0529_06455) - 1347085..1347858 (-) 774 WP_000497303.1 TatD family hydrolase -
  H0529_RS06460 (H0529_06460) - 1347876..1348217 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  H0529_RS06465 (H0529_06465) - 1348229..1349209 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  H0529_RS06470 (H0529_06470) kdsB 1349221..1349982 (-) 762 WP_000680704.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=468396 H0529_RS06440 WP_000836911.1 1345505..1345885(-) (xcpV) [Acinetobacter baumannii strain AC1633]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=468396 H0529_RS06440 WP_000836911.1 1345505..1345885(-) (xcpV) [Acinetobacter baumannii strain AC1633]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTTGCAGCTGTCGCTTTAACTAA
AGTTGCAATGCAGTACACTCAGTCTACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1