Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   I6J98_RS20590 Genome accession   NZ_CP069501
Coordinates   4315284..4315751 (+) Length   155 a.a.
NCBI ID   WP_000340159.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1268     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4310284..4320751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J98_RS20545 (I6J98_20540) rplP 4310394..4310804 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  I6J98_RS20550 (I6J98_20545) rpsC 4310817..4311518 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  I6J98_RS20555 (I6J98_20550) rplV 4311536..4311868 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  I6J98_RS20560 (I6J98_20555) rpsS 4311883..4312161 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  I6J98_RS20565 (I6J98_20560) rplB 4312178..4312999 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  I6J98_RS20570 (I6J98_20565) rplW 4313017..4313319 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  I6J98_RS20575 (I6J98_20570) rplD 4313316..4313921 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  I6J98_RS20580 (I6J98_20575) rplC 4313932..4314561 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  I6J98_RS20585 (I6J98_20580) rpsJ 4314594..4314905 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  I6J98_RS20590 (I6J98_20585) pilD 4315284..4315751 (+) 468 WP_000340159.1 A24 family peptidase Machinery gene
  I6J98_RS20595 (I6J98_20590) bfr 4315748..4316224 (-) 477 WP_000675515.1 bacterioferritin -
  I6J98_RS20600 (I6J98_20595) bfd 4316297..4316491 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  I6J98_RS20605 (I6J98_20600) tuf 4316674..4317858 (-) 1185 WP_000031783.1 elongation factor Tu -
  I6J98_RS20610 (I6J98_20605) fusA 4317929..4320043 (-) 2115 WP_000124700.1 elongation factor G -
  I6J98_RS20615 (I6J98_20610) rpsG 4320140..4320610 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17034.17 Da        Isoelectric Point: 8.1255

>NTDB_id=467635 I6J98_RS20590 WP_000340159.1 4315284..4315751(+) (pilD) [Escherichia coli strain FDAARGOS_1268]
MDATLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=467635 I6J98_RS20590 WP_000340159.1 4315284..4315751(+) (pilD) [Escherichia coli strain FDAARGOS_1268]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368