Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   H0242_RS22460 Genome accession   NZ_CP059148
Coordinates   4387273..4389609 (-) Length   778 a.a.
NCBI ID   WP_086407255.1    Uniprot ID   -
Organism   Bacillus thuringiensis serovar sumiyoshiensis strain 4AO1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4382273..4394609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0242_RS22435 (H0242_22180) - 4384918..4385262 (+) 345 WP_086407254.1 PH domain-containing protein -
  H0242_RS22440 (H0242_22185) - 4385307..4386374 (-) 1068 WP_000793128.1 AI-2E family transporter -
  H0242_RS22445 (H0242_22190) - 4386551..4386763 (+) 213 WP_000242540.1 hypothetical protein -
  H0242_RS22450 (H0242_22195) - 4386810..4386938 (-) 129 WP_001053553.1 YrzQ family protein -
  H0242_RS22455 (H0242_22200) - 4386957..4387145 (-) 189 WP_000469281.1 hypothetical protein -
  H0242_RS22460 (H0242_22205) recD2 4387273..4389609 (-) 2337 WP_086407255.1 ATP-dependent RecD-like DNA helicase Machinery gene
  H0242_RS22465 (H0242_22210) - 4389704..4390363 (-) 660 WP_000066410.1 tetratricopeptide repeat protein -
  H0242_RS22470 (H0242_22215) mnmA 4390473..4391588 (-) 1116 WP_001038009.1 tRNA 2-thiouridine(34) synthase MnmA -
  H0242_RS22475 (H0242_22220) - 4391605..4392750 (-) 1146 WP_086407256.1 cysteine desulfurase family protein -
  H0242_RS22480 (H0242_22225) cymR 4392786..4393202 (-) 417 WP_000704116.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87378.90 Da        Isoelectric Point: 5.2628

>NTDB_id=467382 H0242_RS22460 WP_086407255.1 4387273..4389609(-) (recD2) [Bacillus thuringiensis serovar sumiyoshiensis strain 4AO1]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPEALNGVVNKQKSQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMGKDQLVRETMSLLNNQEGRVTEEDIIGCIEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGEIEEQLNVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNLNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKDGTLPPDLAQNKKDRSFISCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQQVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDIIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFKSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=467382 H0242_RS22460 WP_086407255.1 4387273..4389609(-) (recD2) [Bacillus thuringiensis serovar sumiyoshiensis strain 4AO1]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACATATGACGAAAAGAAAGTAATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACATTGACAGGTCACTTTAAGGACCATCCAAAGTATGGA
AAACAATATTTGGTTGAAACATTTAAAAAAGAATTGCCGCAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAGCGTACAGCTGAAAAAATTGTGGACCATCTCGGGGAACATGCTATTTCTAAAATTATGGATG
ACCCTGAGGCGCTAAATGGTGTTGTTAACAAACAAAAATCTCAGGAAATATATGAGACAATTGTTGAACATCAAGGATTA
GAGAAAGTAATGAGCTTTTTAAATGGTTACGGTTTTGGAACGAAACTGTCTATTAAGATTTACCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAACCCATATCAGCTTATTGAAGAAGTGGACGGGATTGGATTTGGAAGAGCGGATGATA
TAGGACGTGCGTTAGGGATATCGGGTAATCATGATGATCGTGTACGTGCGGGATGTTTTTATACGTTAGAAAATGTATCA
TTACAACTTGGCCACGTTTATATGGGGAAGGATCAACTTGTAAGAGAAACGATGTCACTTTTGAATAACCAAGAAGGAAG
AGTGACAGAGGAAGATATTATAGGTTGTATTGAAATGATGCAAAGTGAAGGGAAAGTTATCATAGAAGAAGAACGAGTAT
ATTTGGCCTCGTTGTTCTACTCTGAAAAAGGCGTTGTAAAGTCCATTCGCAGGCTTATGAACCAAGAAGAAACACCTTCA
TTTCCTGAAGCCGAGGTGTTAAAAACATTAGGTGAAATTGAAGAACAGCTAAACGTGCAGTATGCACCGTTTCAGCAAGA
AGCGATTCAAACGGCACTTCATAAGCCGATGATGTTATTAACAGGTGGACCAGGAACGGGGAAAACAACTGTTATTAAAG
GGATTGTTGAAATGTATGCATCATTGCACGGATTATCGTTAAATCTGAATGAATATAGTGATGATAATCCATTTCCAATA
CTATTAACAGCTCCAACAGGAAGAGCAGCGAAGCGGATGAGTGAATCGACAGGACTTCCAGCTTGCACAATTCACCGTTT
GCTTGGCTGGACGCCAGAAGGATCTTTCCAGCGTAATGAAACGGATCCTGTCCAAGGTAAGCTCCTTATTATTGATGAAT
TTTCAATGGTTGATATTTGGCTTGCAAATCAGCTATTTAAGTCGCTACCGACGAACATTCAAGTTATCGTTGTAGGTGAT
GAAGATCAGTTGCCATCTGTAGGACCTGGACAAGTATTAAAAGATTTATTAAATGCAGGCGCAGTTCCGACAGTGAAGCT
TACTGAAATTTATCGTCAAGCAGAAGGCTCATCTGTTATTCAACTTGCCCATGCAATCAAAGACGGCACGCTCCCGCCAG
ATTTAGCACAAAATAAAAAAGATCGTTCATTTATCAGCTGTACAGGGGCTCAAATTGTTGAGGTTGTGAAAAAAGTTTGC
GAAAATGCTAAAACAAAAGGATTTAGTGCAAGGGATGTCCAAGTATTAGCACCGATGTACCGCGGGCCTGCTGGTATTAA
TGTATTAAACGAAGCATTGCAACAAGTATTTAATCCGAAGAGGGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTAT
ACCGAAGAGGCGATAAAGTACTGCAACTCGTTAATCAGCCAGAGAGCCAAGTGTTTAATGGTGATATTGGAGAAATTGTT
TCGGTGTTTTATGCGAAAGAAAACGTTGAGCAACAAGATATAATTATCGTTTCATTTGATGGAATTGAGGTAACGTATAC
AAAGCCCGATTTAAATCAAATTACGCATGCATATTGTTGTTCCATTCATAAATCACAAGGTAGTGAATTTCCGATTGTTA
TTATGCCGATCGTGAAAAGTTACAACCGTATGTTACGTCGTAATTTAATTTACACGGGCATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGGGAGGAAGCAGCTTTCAAATCTGGTGTAAATCGGCTTGATGATGCAATGCGTCAAACAACTTTGGC
TAGTCGCTTGCAGGAATCACAAGGAGAAGTACAGATGGTCACAGTTAATGGCGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

AAA domain (AAA_30)

(341-548)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.637

100

0.576