Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   H0S56_RS05645 Genome accession   NZ_CP059081
Coordinates   1176273..1176914 (+) Length   213 a.a.
NCBI ID   WP_180180889.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain 12CE1     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1171273..1181914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S56_RS05610 (H0S56_05610) kdsB 1171604..1172365 (+) 762 WP_195725853.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  H0S56_RS05615 (H0S56_05615) - 1172380..1173360 (+) 981 WP_195725854.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  H0S56_RS05620 (H0S56_05620) - 1173376..1173717 (+) 342 WP_004278877.1 PilZ domain-containing protein -
  H0S56_RS05625 (H0S56_05625) - 1173745..1174518 (+) 774 WP_195725855.1 TatD family hydrolase -
  H0S56_RS05630 (H0S56_05630) - 1174560..1175174 (+) 615 WP_005252237.1 TetR/AcrR family transcriptional regulator -
  H0S56_RS05635 (H0S56_05635) - 1175184..1175735 (+) 552 WP_005106567.1 type II secretion system protein -
  H0S56_RS05640 (H0S56_05640) gspI 1175725..1176276 (+) 552 WP_406935372.1 type II secretion system minor pseudopilin GspI -
  H0S56_RS05645 (H0S56_05645) xcpW 1176273..1176914 (+) 642 WP_180180889.1 type II secretion system minor pseudopilin GspJ Machinery gene
  H0S56_RS05650 (H0S56_05650) gspK 1176921..1177892 (+) 972 WP_195725857.1 type II secretion system minor pseudopilin GspK -
  H0S56_RS05655 (H0S56_05655) - 1178045..1178641 (+) 597 WP_180037416.1 6-carboxytetrahydropterin synthase -
  H0S56_RS05660 (H0S56_05660) ung 1178688..1179401 (+) 714 WP_005247316.1 uracil-DNA glycosylase -
  H0S56_RS05665 (H0S56_05665) - 1179398..1180519 (+) 1122 WP_195725858.1 enoyl-CoA hydratase/isomerase family protein -
  H0S56_RS05670 (H0S56_05670) tadA 1180526..1181041 (+) 516 WP_195725859.1 tRNA adenosine(34) deaminase TadA -
  H0S56_RS05675 (H0S56_05675) - 1181102..1181533 (+) 432 WP_195725860.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24311.57 Da        Isoelectric Point: 4.6438

>NTDB_id=467126 H0S56_RS05645 WP_180180889.1 1176273..1176914(+) (xcpW) [Acinetobacter lwoffii strain 12CE1]
MKPKGFTLVELMVAIAIFAVLSALGWKVFDYIVKTKDQNVIHEQRLGQLQQTYQQILRDTVQTVPLTANINGDIQPALVL
QNGRFNFSKTGVTDPLEEGISPDERIEYQYRADEQKLYRLKYRNLNQTGQDQPESSVLLSEVEQFQIVVLNPNELTQWPD
ASADLNLLEHKQRLPKGIKINLTVNGVSYEWMFSLLNTDFLLDTQNTGQPSSE

Nucleotide


Download         Length: 642 bp        

>NTDB_id=467126 H0S56_RS05645 WP_180180889.1 1176273..1176914(+) (xcpW) [Acinetobacter lwoffii strain 12CE1]
ATGAAGCCTAAAGGATTTACCCTAGTTGAATTAATGGTCGCAATTGCGATCTTTGCGGTGCTGTCTGCTTTGGGCTGGAA
AGTTTTTGATTATATTGTCAAAACTAAAGATCAGAATGTGATTCATGAACAGCGTCTAGGTCAGTTACAACAAACCTATC
AGCAGATTCTGCGAGATACCGTACAGACAGTCCCCTTAACGGCCAACATCAATGGGGATATTCAACCGGCTCTAGTGCTG
CAGAACGGACGCTTTAATTTCAGTAAAACCGGGGTAACTGATCCTTTGGAAGAAGGGATTTCCCCAGATGAGCGCATTGA
ATATCAGTATCGAGCCGATGAGCAGAAGCTTTATCGCCTGAAATACCGGAATCTGAATCAGACAGGTCAAGATCAGCCAG
AATCCAGTGTTTTATTGTCGGAAGTAGAACAATTCCAGATCGTCGTACTCAATCCGAATGAGCTCACGCAATGGCCAGAT
GCTTCTGCTGATCTGAATCTGTTAGAGCATAAACAGCGTTTGCCTAAAGGGATTAAAATCAATTTAACCGTGAATGGCGT
TAGCTATGAATGGATGTTCAGTTTATTAAATACGGACTTTTTGCTTGATACTCAGAACACCGGTCAACCCAGCTCAGAAT
AA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-24)

Type II secretion system (T2SS), protein J (T2SSJ)

(58-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

58.706

94.366

0.554