Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   H0S57_RS09500 Genome accession   NZ_CP059080
Coordinates   1952650..1953270 (-) Length   206 a.a.
NCBI ID   WP_195728025.1    Uniprot ID   A0AA42U7Y4
Organism   Acinetobacter johnsonii strain E10B     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1947650..1958270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S57_RS09470 (H0S57_09475) - 1948016..1948447 (-) 432 WP_151835650.1 SRPBCC family protein -
  H0S57_RS09475 (H0S57_09480) tadA 1948523..1949023 (-) 501 WP_005401161.1 tRNA adenosine(34) deaminase TadA -
  H0S57_RS09480 (H0S57_09485) - 1949029..1950150 (-) 1122 WP_151835651.1 enoyl-CoA hydratase/isomerase family protein -
  H0S57_RS09485 (H0S57_09490) ung 1950147..1950860 (-) 714 WP_004696856.1 uracil-DNA glycosylase -
  H0S57_RS09490 (H0S57_09495) - 1950902..1951498 (-) 597 WP_004984830.1 6-carboxytetrahydropterin synthase -
  H0S57_RS09495 (H0S57_09500) gspK 1951621..1952571 (-) 951 WP_195728024.1 type II secretion system minor pseudopilin GspK -
  H0S57_RS09500 (H0S57_09505) xcpW 1952650..1953270 (-) 621 WP_195728025.1 type II secretion system minor pseudopilin GspJ Machinery gene
  H0S57_RS09505 (H0S57_09510) xcpV 1953267..1953617 (-) 351 WP_406935391.1 type II secretion system protein Machinery gene
  H0S57_RS09510 (H0S57_09515) - 1953745..1954314 (-) 570 WP_078388685.1 type II secretion system protein -
  H0S57_RS09515 (H0S57_09520) - 1954327..1954941 (-) 615 WP_114836892.1 TetR/AcrR family transcriptional regulator -
  H0S57_RS09520 (H0S57_09525) - 1954987..1955760 (-) 774 WP_195728026.1 TatD family hydrolase -
  H0S57_RS09525 (H0S57_09530) - 1955787..1956128 (-) 342 WP_058869739.1 PilZ domain-containing protein -
  H0S57_RS09530 (H0S57_09535) - 1956142..1957125 (-) 984 WP_151835655.1 AAA family ATPase -
  H0S57_RS09535 (H0S57_09540) kdsB 1957145..1957906 (-) 762 WP_004984853.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23545.08 Da        Isoelectric Point: 5.3491

>NTDB_id=467089 H0S57_RS09500 WP_195728025.1 1952650..1953270(-) (xcpW) [Acinetobacter johnsonii strain E10B]
MTKRSGFTLVELLVAIAIFAVLSALGWKVFDYLIKIKERNTQHEQRLGQLQEAYQQVLRDTVQIVPITANVAGQVQPAVM
LQNGQLTFSKTGVTDPLMQGIPPEERVEYIYKADEKKLYRYKYKNLNQTGNDQPETSVLLDSVDQFQIMLLNPNEIAQWP
EVALSENDVTQAKILPRGLKINLTVNEVSYEWVFSLLNTDFLKQKN

Nucleotide


Download         Length: 621 bp        

>NTDB_id=467089 H0S57_RS09500 WP_195728025.1 1952650..1953270(-) (xcpW) [Acinetobacter johnsonii strain E10B]
ATGACAAAACGCTCAGGCTTTACTTTGGTTGAGTTATTGGTGGCAATCGCGATTTTTGCTGTGCTTTCAGCTTTGGGTTG
GAAGGTTTTTGATTATCTGATCAAGATTAAAGAGCGTAATACCCAACATGAACAGCGCTTAGGTCAGCTACAAGAAGCAT
ATCAACAAGTGTTACGTGACACTGTGCAAATTGTACCAATTACTGCCAATGTTGCGGGGCAGGTTCAACCCGCAGTCATG
TTGCAAAATGGTCAGTTAACCTTTAGTAAAACTGGCGTGACTGATCCTTTAATGCAAGGTATACCGCCTGAAGAGCGAGT
TGAATATATTTATAAAGCAGATGAAAAAAAACTGTACCGTTATAAATATAAAAATTTAAATCAAACAGGTAATGATCAAC
CTGAAACCAGTGTTTTACTTGATTCAGTTGATCAATTTCAAATTATGTTACTCAATCCCAATGAAATAGCACAATGGCCT
GAGGTGGCATTGAGTGAAAATGATGTGACTCAGGCAAAAATACTACCGCGCGGGTTAAAAATAAACCTCACTGTCAATGA
AGTGAGTTATGAATGGGTGTTTAGTTTATTAAATACAGACTTTTTAAAACAAAAAAATTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(59-188)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

58.706

97.573

0.573