Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   SLUG_RS08265 Genome accession   NC_017353
Coordinates   1735042..1735914 (-) Length   290 a.a.
NCBI ID   WP_012990865.1    Uniprot ID   -
Organism   Staphylococcus lugdunensis N920143     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1730042..1740914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLUG_RS08250 (SLUG_16450) xerC 1730429..1731322 (-) 894 WP_002459293.1 tyrosine recombinase XerC -
  SLUG_RS08255 (SLUG_16460) trmFO 1731454..1732761 (-) 1308 WP_002459294.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  SLUG_RS08260 (SLUG_16470) topA 1732813..1734876 (-) 2064 WP_173362271.1 type I DNA topoisomerase -
  SLUG_RS08265 (SLUG_16480) dprA 1735042..1735914 (-) 873 WP_012990865.1 DNA-processing protein DprA Machinery gene
  SLUG_RS08275 (SLUG_16500) - 1736516..1737751 (-) 1236 WP_014533319.1 aminoacyltransferase -
  SLUG_RS08280 (SLUG_16510) - 1737765..1738913 (-) 1149 WP_002478288.1 LysM peptidoglycan-binding domain-containing protein -
  SLUG_RS08285 (SLUG_16520) sucD 1739110..1740018 (-) 909 WP_002478289.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33042.89 Da        Isoelectric Point: 8.3798

>NTDB_id=46692 SLUG_RS08265 WP_012990865.1 1735042..1735914(-) (dprA) [Staphylococcus lugdunensis N920143]
MDDIVLLKLRYSGIQAPQFQRLIHAYPNFLSFSEYDLLNLLSKTEIKKWFGDIAAQYKRISEDYILTSLYDASVKFITIN
SQCYSTLLKEIYDFPPILFYRGDISLLNSNTTLAVVGSRKATSYSYKALDFLFSQFNRRFTIVSGLAKGADSMAHELAIQ
HHHATIAVLGFGHLAHYPKETYILRQKIEAHHLSISEYLPFEPVTKYHFPQRNRLISGISKGVLITEAEKRSGSQITIAH
ALDQNRNVYVLPGDLFNPLTQGNLYRAREGACIVTGAEDILMDYDINKVF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=46692 SLUG_RS08265 WP_012990865.1 1735042..1735914(-) (dprA) [Staphylococcus lugdunensis N920143]
GTGGACGATATTGTTTTATTAAAATTACGTTATAGTGGCATACAAGCGCCTCAATTTCAACGGCTTATACATGCGTACCC
TAACTTTTTATCATTTTCAGAGTATGATTTACTTAATTTATTATCGAAGACAGAAATTAAAAAATGGTTCGGAGACATAG
CTGCACAATACAAACGGATTTCTGAAGATTATATTTTAACATCATTATACGATGCCTCTGTCAAATTTATCACTATCAAT
AGCCAATGTTATTCTACCTTATTAAAAGAAATTTATGATTTTCCACCAATCCTATTTTATCGTGGTGATATTTCACTCCT
TAATTCAAACACTACATTAGCCGTTGTCGGTTCTCGTAAAGCCACAAGTTATTCCTACAAAGCTTTAGACTTTTTATTTA
GCCAATTTAATCGTCGCTTCACGATTGTTTCAGGTTTAGCTAAAGGAGCCGATAGCATGGCACACGAATTAGCTATACAA
CACCATCATGCGACAATTGCAGTACTTGGATTTGGACATCTCGCACATTATCCTAAAGAAACATATATTTTACGTCAAAA
AATTGAAGCACATCACTTATCAATCAGTGAATATTTACCTTTCGAACCAGTAACGAAATATCATTTTCCACAACGAAATC
GCTTAATAAGCGGTATTTCTAAAGGTGTACTGATTACCGAAGCTGAAAAACGTAGTGGTAGTCAGATTACAATCGCACAT
GCACTTGACCAAAATAGAAATGTTTATGTTCTTCCAGGAGATCTATTTAATCCACTTACACAAGGTAATTTATATCGTGC
ACGAGAAGGAGCGTGTATTGTTACAGGAGCTGAAGATATTTTAATGGATTATGATATTAATAAAGTTTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

48.136

100

0.49
  dprA Staphylococcus aureus MW2

48.136

100

0.49

Multiple sequence alignment