Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   H0A38_RS10625 Genome accession   NZ_CP059048
Coordinates   2166748..2167686 (-) Length   312 a.a.
NCBI ID   WP_109991327.1    Uniprot ID   -
Organism   Lactococcus lactis strain LAC460     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2161748..2172686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0A38_RS10600 (H0A38_10540) frr 2161866..2162423 (-) 558 WP_004254618.1 ribosome recycling factor -
  H0A38_RS10605 (H0A38_10545) pyrH 2162635..2163351 (-) 717 WP_021464089.1 UMP kinase -
  H0A38_RS10610 (H0A38_10550) - 2163436..2163888 (-) 453 WP_021464090.1 hypothetical protein -
  H0A38_RS10615 (H0A38_10555) - 2164022..2165209 (-) 1188 WP_129881150.1 acetate kinase -
  H0A38_RS10620 (H0A38_10560) - 2165366..2166553 (-) 1188 WP_004254593.1 acetate kinase -
  H0A38_RS10625 (H0A38_10565) comYH 2166748..2167686 (-) 939 WP_109991327.1 class I SAM-dependent methyltransferase Machinery gene
  H0A38_RS10630 (H0A38_10570) - 2167774..2168025 (-) 252 WP_004254583.1 DUF3165 family protein -
  H0A38_RS10635 (H0A38_10575) typA 2168126..2169958 (-) 1833 WP_025016832.1 translational GTPase TypA -
  H0A38_RS12015 (H0A38_10580) - 2170146..2170604 (-) 459 WP_058204391.1 hypothetical protein -
  H0A38_RS10645 (H0A38_10585) - 2170761..2171387 (-) 627 WP_226319340.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34740.90 Da        Isoelectric Point: 4.4060

>NTDB_id=466774 H0A38_RS10625 WP_109991327.1 2166748..2167686(-) (comYH) [Lactococcus lactis strain LAC460]
MDMEKVAQGFELVVANIMLLSEKLGTDFYDAFVEQNAAFLDDTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
QAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVATTDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAVITLPKSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=466774 H0A38_RS10625 WP_109991327.1 2166748..2167686(-) (comYH) [Lactococcus lactis strain LAC460]
ATGGATATGGAAAAAGTGGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTATTATCTGAGAAATTGGGTACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTTTTTTAGATGATACTGACCAAGGAATTGTTGAATTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAAGGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGGTCACAA
GTCGCACCACTTCAGCCCAATCATGCAATGACTCCAGATGCAATTGGTTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGGTCCGGTATGGGTAATCTTGCTGAAACGCTTTTGGTTAATCTTAATA
AAAAGGTTGATTATGTAGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAATTATGGGGAGT
CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGCAGACGTTGTTGTCAGTGATTTACCAAT
TGGTTTTTATCCAGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGACTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCCTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCACTATTAAAGGAGTGGATTAGTAAACATGGAAGTGTGATGGCTGTCATCACTTTACCAAAATCACTTTTTAA
TGCTGATGCTAAGGCGATTTATGTTTTGAAAAAGGGGCCGGCTGCACATGCAACTTTTGCTCACCCTTTGTCTTCACTGA
CAGACAGAGAAAGTTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.882

100

0.49
  comYH Streptococcus mutans UA159

48.562

100

0.487