Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   I6J32_RS12485 Genome accession   NZ_CP069437
Coordinates   2602899..2603351 (+) Length   150 a.a.
NCBI ID   WP_204155761.1    Uniprot ID   -
Organism   Moraxella osloensis strain FDAARGOS_1202     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2597899..2608351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J32_RS12475 (I6J32_12495) - 2598278..2602336 (+) 4059 WP_204155760.1 pilus assembly protein PilY -
  I6J32_RS12480 (I6J32_12500) comE 2602345..2602905 (+) 561 WP_323127479.1 type IV pilin protein Machinery gene
  I6J32_RS12485 (I6J32_12505) comF 2602899..2603351 (+) 453 WP_204155761.1 type IV pilin protein Machinery gene
  I6J32_RS12490 (I6J32_12510) - 2603701..2604978 (-) 1278 WP_062331497.1 O-antigen ligase family protein -
  I6J32_RS12495 (I6J32_12515) pilA2 2604978..2605481 (-) 504 WP_156627541.1 pilin Machinery gene
  I6J32_RS12500 (I6J32_12520) - 2605893..2607692 (+) 1800 WP_204155762.1 PglL family O-oligosaccharyltransferase -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 16351.56 Da        Isoelectric Point: 6.2742

>NTDB_id=466613 I6J32_RS12485 WP_204155761.1 2602899..2603351(+) (comF) [Moraxella osloensis strain FDAARGOS_1202]
MVMKNRYSQQGFTLIELMIVVAIIGVLAAIAYPSYQRYVIKTKRTDMMTEMQNIASQIESRKLAQGSYTNAGTGLDGSFP
RSGTALYTIALAPTPLTDRWTITATPVSSSQMATDGTLTLNAQGLKCRDKNNDGDTQDPGECGMGQEWNN

Nucleotide


Download         Length: 453 bp        

>NTDB_id=466613 I6J32_RS12485 WP_204155761.1 2602899..2603351(+) (comF) [Moraxella osloensis strain FDAARGOS_1202]
ATGGTAATGAAAAATCGATATAGTCAACAAGGGTTTACCCTAATCGAGCTGATGATTGTGGTTGCTATTATTGGCGTGCT
GGCGGCGATTGCGTATCCTAGCTATCAACGCTACGTCATCAAGACCAAACGCACCGATATGATGACAGAGATGCAAAATA
TCGCCTCGCAGATTGAATCACGTAAACTGGCACAAGGCAGTTACACGAACGCAGGCACGGGATTAGATGGGAGTTTCCCT
AGAAGTGGTACAGCCTTGTATACCATTGCCCTAGCACCCACCCCCCTCACTGACCGTTGGACAATTACAGCCACACCTGT
TAGTTCATCGCAGATGGCAACTGATGGTACGCTCACGCTAAACGCGCAAGGGCTCAAATGTCGCGATAAAAATAATGATG
GCGATACCCAAGATCCAGGCGAATGTGGTATGGGTCAAGAGTGGAATAACTAG

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(33-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

48

83.333

0.4
  pilE Acinetobacter baumannii D1279779

48.78

82

0.4