Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   HZ310_RS11235 Genome accession   NZ_CP058951
Coordinates   2144656..2145435 (-) Length   259 a.a.
NCBI ID   WP_003210838.1    Uniprot ID   -
Organism   Bacillus pumilus strain UAMX     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2139656..2150435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ310_RS11205 (HZ310_11205) fliH 2139772..2140536 (-) 765 WP_144462056.1 flagellar assembly protein FliH -
  HZ310_RS11210 (HZ310_11210) fliG 2140529..2141545 (-) 1017 WP_012009955.1 flagellar motor switch protein FliG -
  HZ310_RS11215 (HZ310_11215) fliF 2141557..2143149 (-) 1593 WP_180309014.1 flagellar basal-body MS-ring/collar protein FliF -
  HZ310_RS11220 (HZ310_11220) fliE 2143199..2143516 (-) 318 WP_058013997.1 flagellar hook-basal body complex protein FliE -
  HZ310_RS11225 (HZ310_11225) flgC 2143528..2143980 (-) 453 WP_058013998.1 flagellar basal body rod protein FlgC -
  HZ310_RS11230 (HZ310_11230) flgB 2143980..2144369 (-) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  HZ310_RS11235 (HZ310_11235) codY 2144656..2145435 (-) 780 WP_003210838.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  HZ310_RS11240 (HZ310_11240) hslU 2145470..2146870 (-) 1401 WP_003211907.1 HslU--HslV peptidase ATPase subunit -
  HZ310_RS11245 (HZ310_11245) hslV 2146887..2147432 (-) 546 WP_003211247.1 ATP-dependent protease subunit HslV -
  HZ310_RS11250 (HZ310_11250) xerC 2147447..2148364 (-) 918 WP_058013999.1 tyrosine recombinase XerC -
  HZ310_RS11255 (HZ310_11255) trmFO 2148427..2149731 (-) 1305 WP_034662383.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29060.31 Da        Isoelectric Point: 4.6614

>NTDB_id=466095 HZ310_RS11235 WP_003210838.1 2144656..2145435(-) (codY) [Bacillus pumilus strain UAMX]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKSE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=466095 HZ310_RS11235 WP_003210838.1 2144656..2145435(-) (codY) [Bacillus pumilus strain UAMX]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTTAAGGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTAGGCTACTCGATCA
ACCAGCAGATTGAAAATCCGCGTATGAAGAAAATGCTTGAAGACCGTCAATTCCCTGAAGAATATACAAAGAGTCTATTC
AACATCCCTGAAACATCTTCAAATCTTGACATTAACAGTGAGTATACAGCTTTCCCGATTGAGAACCGTGATTTATTTGA
ATCAGGTTTGACAACCATTGTGCCAATTATCGGAGGAGGAGATCGTTTAGGAACGTTAATCCTGTCTCGTTTGCAAGATA
CATTTAAAGATGATGATTTAATTCTTGCTGAATACGGTGCAACAGTTGTTGGAATGGAGATCCTTCGTGAGAAGTCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCAGTTGTCCAAATGGCGATTAGTTCTCTTTCATATAGTGAGCTTGAAGCCAT
TGAACACATCTTTGAAGAACTTGATGGCAACGAAGGGCTTCTAGTGGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTGAACGCCTTACGTAAGTTAGAAAGTGCTGGCGTCATCGAATCTCGCTCTCTTGGAATGAAGGGAACG
TATATCAAAGTGTTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

95.367

100

0.954
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471