Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   HZ310_RS06645 Genome accession   NZ_CP058951
Coordinates   1272611..1274935 (+) Length   774 a.a.
NCBI ID   WP_180310440.1    Uniprot ID   -
Organism   Bacillus pumilus strain UAMX     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1267611..1279935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ310_RS06625 (HZ310_06625) - 1268833..1269129 (+) 297 WP_003216788.1 post-transcriptional regulator -
  HZ310_RS06630 (HZ310_06630) secDF 1269171..1271399 (+) 2229 WP_180310439.1 protein translocase subunit SecDF -
  HZ310_RS06635 (HZ310_06635) - 1271586..1272074 (+) 489 WP_058014558.1 cation:proton antiporter regulatory subunit -
  HZ310_RS06640 (HZ310_06640) - 1272176..1272529 (+) 354 WP_058014559.1 lipopolysaccharide assembly LapA domain-containing protein -
  HZ310_RS06645 (HZ310_06645) recJ 1272611..1274935 (+) 2325 WP_180310440.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  HZ310_RS06650 (HZ310_06650) - 1274959..1275471 (+) 513 WP_003216770.1 adenine phosphoribosyltransferase -
  HZ310_RS06655 (HZ310_06655) - 1275614..1277824 (+) 2211 WP_012010732.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  HZ310_RS06660 (HZ310_06660) dtd 1277843..1278286 (+) 444 WP_180310441.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 774 a.a.        Molecular weight: 87330.97 Da        Isoelectric Point: 4.9266

>NTDB_id=466082 HZ310_RS06645 WP_180310440.1 1272611..1274935(+) (recJ) [Bacillus pumilus strain UAMX]
MLLSKMRWEYEHPSEEKVKSLSENLNISALTASLLVKRGLEEVEEARSFLFDQKAEFHDPFLLKGMKEAVERINKAIEQQ
ESIVIFGDYDADGVTSTSVLLHTLKELSAKVDFYIPDRFKEGYGPNEQAFRYIKEQGASLVITVDTGIAAVNEARIAKEI
GLDLIITDHHEPSEELPEALAIVHPKQPGCEYPFKELAGVGVAFKVAHALLGKLPAQLLDLAAIGTIADLVPLHDENRWL
AKKGLMQLRQSNRPGLKALLKEAGATLEEANEETVGFQIAPRLNAVGRIEQADPAVHLLMTEEKDEAEELARFVQELNKE
RQKIVSTITEEAIQMVEETGDDQSAIVVAKAGWNPGVVGIVASKLTDTFSRPAIVLGIDEETQMAKGSARSIPGFDLFFH
LSKCRDILPHFGGHPMAAGMTLRADDVHLLRERLNQYANETLTEEDFIPIQRVDAVCKVDELTVEAIEEVGMLSPFGMQN
PKPFIMIEDARLEEIRTIGANQNHIKMSLKDEDKLLDCVGFHQGQLKEEIVTGSRISVIGEMSINEWNNRKKPQLMLKDA
RVDEWQLFDLRGKKDWEKTISTLDPEKYVVVCFDEETKEEVSIPIHHVHAENVSTLDVEGKYVVFADVPADEHLLRQLLE
NQKPARVYTVFQRKEDHFMSSFPSRDQFKWFYGFLLKRGSFPLKEQGMELAKHRGWTKDTMIFMTKVFFELGFVKIENGV
LSIVRDAPKKDLTASASYTAKQRLMELDQTLTYSSAKELKEWLNSMMSEVSTVL

Nucleotide


Download         Length: 2325 bp        

>NTDB_id=466082 HZ310_RS06645 WP_180310440.1 1272611..1274935(+) (recJ) [Bacillus pumilus strain UAMX]
ATGTTATTATCCAAAATGCGCTGGGAATATGAACATCCAAGCGAAGAAAAAGTGAAATCACTCTCTGAAAATCTGAATAT
TTCAGCGCTGACTGCATCGCTTCTTGTAAAAAGAGGACTCGAAGAAGTAGAAGAAGCGAGGTCTTTTTTATTTGATCAAA
AAGCTGAATTTCATGATCCATTTCTATTAAAAGGAATGAAAGAAGCAGTAGAGCGCATCAACAAAGCGATCGAACAGCAG
GAATCGATTGTGATCTTCGGAGACTATGATGCGGATGGTGTGACAAGTACGTCTGTGCTTTTACATACATTAAAAGAGTT
GTCTGCGAAAGTAGACTTTTATATTCCAGATCGATTTAAAGAAGGCTACGGGCCTAATGAACAGGCTTTTCGATATATCA
AAGAGCAAGGCGCATCGCTTGTCATCACCGTCGATACAGGCATTGCAGCTGTAAATGAAGCGCGTATTGCAAAAGAAATA
GGGTTAGACTTGATCATTACAGATCACCATGAACCAAGCGAAGAGCTGCCTGAAGCACTTGCGATTGTCCATCCTAAGCA
GCCAGGCTGTGAGTATCCCTTTAAAGAACTTGCCGGTGTAGGCGTAGCATTTAAAGTGGCTCATGCTCTTCTTGGTAAGC
TGCCAGCTCAGCTGTTAGATCTTGCGGCAATTGGGACAATAGCTGATCTTGTGCCGCTTCATGATGAGAATAGATGGCTC
GCTAAAAAAGGGCTTATGCAGCTTCGGCAGTCGAATAGACCGGGCCTGAAGGCGTTATTGAAAGAAGCGGGTGCTACTCT
TGAAGAAGCAAATGAGGAAACGGTCGGCTTTCAAATTGCGCCAAGACTGAATGCTGTAGGACGAATTGAACAGGCAGATC
CAGCTGTTCATCTTCTCATGACAGAGGAAAAGGATGAAGCAGAAGAACTCGCTCGTTTTGTACAAGAACTGAATAAAGAA
CGTCAAAAAATTGTGAGTACGATCACAGAAGAAGCCATTCAAATGGTGGAAGAGACAGGTGATGACCAGTCTGCCATTGT
TGTAGCGAAAGCTGGCTGGAATCCGGGTGTTGTTGGAATTGTTGCCTCTAAATTGACAGATACATTTTCTCGTCCGGCGA
TTGTGCTTGGAATAGATGAAGAGACGCAAATGGCAAAAGGTTCAGCACGGAGTATTCCCGGCTTCGATCTATTTTTCCAT
TTAAGCAAATGCCGCGACATTCTGCCGCATTTCGGCGGGCACCCGATGGCTGCGGGCATGACACTTCGAGCGGATGATGT
CCATTTACTAAGGGAAAGATTAAATCAATATGCGAATGAAACGTTGACAGAGGAAGACTTTATTCCGATTCAGCGGGTCG
ATGCTGTATGCAAGGTAGACGAATTGACGGTTGAAGCGATTGAAGAAGTGGGGATGCTGTCACCATTTGGCATGCAGAAT
CCAAAGCCATTCATCATGATTGAAGATGCGAGACTTGAAGAAATCCGAACCATTGGAGCAAATCAAAATCATATCAAAAT
GTCTCTGAAAGATGAAGACAAACTGCTTGACTGTGTCGGTTTTCATCAAGGTCAATTGAAAGAAGAAATTGTCACAGGTA
GCCGGATTTCCGTCATTGGTGAAATGTCCATCAATGAATGGAATAACCGGAAGAAACCACAGCTCATGCTAAAAGATGCC
CGAGTAGATGAATGGCAGCTGTTTGATTTGCGCGGCAAAAAGGATTGGGAAAAGACAATCTCCACGCTTGACCCCGAAAA
ATATGTGGTGGTCTGTTTCGACGAAGAAACAAAAGAGGAAGTCAGCATCCCGATTCATCATGTCCATGCAGAAAATGTTT
CAACACTCGATGTTGAAGGCAAGTATGTCGTCTTTGCAGATGTCCCTGCAGATGAACACTTGCTAAGGCAGCTGTTAGAA
AATCAAAAGCCAGCTAGAGTGTATACAGTTTTCCAAAGAAAAGAAGATCATTTCATGTCCTCTTTCCCTAGTCGTGATCA
ATTCAAATGGTTTTATGGATTCTTGTTAAAACGAGGAAGTTTCCCTCTCAAGGAACAAGGAATGGAGCTTGCGAAACATA
GAGGCTGGACAAAAGATACAATGATTTTTATGACAAAGGTGTTTTTTGAACTCGGTTTTGTTAAAATAGAGAATGGTGTG
CTGTCAATAGTACGTGATGCCCCTAAAAAAGATTTAACGGCATCAGCATCCTATACAGCAAAACAACGATTGATGGAACT
CGATCAAACACTAACATATTCCTCAGCCAAAGAGCTGAAGGAATGGCTGAATAGCATGATGAGCGAAGTCTCAACTGTGC
TTTGA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-763)

RecJ OB domain (RecJ_OB)

(453-559)

DHHA1 domain (DHHA1)

(309-437)

DHH family (DHH)

(83-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

67.181

100

0.674