Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   JQ464_RS07725 Genome accession   NZ_CP069332
Coordinates   1668382..1668807 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain R08     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1663382..1673807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQ464_RS07705 (JQ464_07695) ileS 1663539..1666370 (+) 2832 WP_003102617.1 isoleucine--tRNA ligase -
  JQ464_RS07710 (JQ464_07700) lspA 1666363..1666872 (+) 510 WP_003102615.1 signal peptidase II -
  JQ464_RS07715 (JQ464_07705) fkpB 1666865..1667305 (+) 441 WP_003161775.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  JQ464_RS07720 (JQ464_07710) ispH 1667391..1668335 (+) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  JQ464_RS07725 (JQ464_07715) comF 1668382..1668807 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  JQ464_RS07730 (JQ464_07720) pilY2 1668804..1669151 (-) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  JQ464_RS07735 (JQ464_07725) pilY1 1669153..1672644 (-) 3492 WP_010793785.1 type 4a pilus biogenesis protein PilY1 -
  JQ464_RS07740 (JQ464_07730) pilX 1672656..1673243 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=465713 JQ464_RS07725 WP_003094721.1 1668382..1668807(-) (comF) [Pseudomonas aeruginosa strain R08]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=465713 JQ464_RS07725 WP_003094721.1 1668382..1668807(-) (comF) [Pseudomonas aeruginosa strain R08]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGGCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383