Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   JQ467_RS02410 Genome accession   NZ_CP069326
Coordinates   528799..529524 (-) Length   241 a.a.
NCBI ID   WP_003103309.1    Uniprot ID   Q9I629
Organism   Pseudomonas aeruginosa strain R11     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 523799..534524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQ467_RS02385 (JQ467_02385) - 524271..524786 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  JQ467_RS02390 (JQ467_02390) rarD 525477..526373 (-) 897 WP_003103301.1 EamA family transporter RarD -
  JQ467_RS02395 (JQ467_02395) - 526575..527549 (-) 975 WP_003113256.1 serine/threonine protein kinase -
  JQ467_RS02400 (JQ467_02400) - 527611..528369 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  JQ467_RS02405 (JQ467_02405) - 528437..528757 (-) 321 WP_003103307.1 YfiM family lipoprotein -
  JQ467_RS02410 (JQ467_02410) comF 528799..529524 (-) 726 WP_003103309.1 ComF family protein Machinery gene
  JQ467_RS02415 (JQ467_02415) - 529663..529956 (-) 294 WP_003113255.1 hypothetical protein -
  JQ467_RS02420 (JQ467_02420) - 530010..530936 (-) 927 WP_003118849.1 LysR family transcriptional regulator -
  JQ467_RS02425 (JQ467_02425) - 531054..531812 (+) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  JQ467_RS02430 (JQ467_02430) - 531889..532137 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  JQ467_RS02435 (JQ467_02435) - 532148..533524 (+) 1377 WP_010793522.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  JQ467_RS02440 (JQ467_02440) - 533526..534404 (+) 879 WP_010793521.1 allophanate hydrolase subunit 1 -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27088.60 Da        Isoelectric Point: 11.2212

>NTDB_id=465083 JQ467_RS02410 WP_003103309.1 528799..529524(-) (comF) [Pseudomonas aeruginosa strain R11]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=465083 JQ467_RS02410 WP_003103309.1 528799..529524(-) (comF) [Pseudomonas aeruginosa strain R11]
ATGTCGTTCCCGCTTCGTCCTCTCACTCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCACTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGACTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9I629

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382