Detailed information NTG0464751

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: JQC68_RS08055
• Genome accession: NZ_CP069308
• Coordinates: 1616390..1617733 (-)
• Length: 447 a.a.
• NCBI ID: WP_035520462.1
• Uniprot ID: -
• Organism: Glaesserella parasuis strain EHP1804
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1611390..1622733

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JQC68_RS08035 (JQC68_08030)	-	1612891..1613301 (-)	411	WP_021114581.1	ExbD/TolR family protein	-
JQC68_RS08040 (JQC68_08035)	-	1613301..1613969 (-)	669	WP_021110458.1	MotA/TolQ/ExbB proton channel family protein	-
JQC68_RS08045 (JQC68_08040)	-	1613987..1614610 (-)	624	WP_234921593.1	energy transducer TonB	-
JQC68_RS08050 (JQC68_08045)	-	1614927..1616387 (+)	1461	WP_160412669.1	porin family protein	-
JQC68_RS08055 (JQC68_08050)	rarA	1616390..1617733 (-)	1344	WP_035520462.1	replication-associated recombination protein A	Machinery gene
JQC68_RS08060 (JQC68_08055)	mreD	1617733..1618221 (-)	489	WP_005710534.1	rod shape-determining protein MreD	-
JQC68_RS08065 (JQC68_08060)	mreC	1618221..1619270 (-)	1050	WP_005710533.1	rod shape-determining protein MreC	-
JQC68_RS08070 (JQC68_08065)	-	1619362..1620414 (-)	1053	WP_005710531.1	rod shape-determining protein	-
JQC68_RS08075 (JQC68_08070)	pntA	1620691..1622223 (+)	1533	WP_021114578.1	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	-

Sequence

Protein

• Length: 447 a.a.
• Molecular weight: 50186.07 Da
• Isoelectric Point: 6.3274

>NTDB_id=464751 JQC68_RS08055 WP_035520462.1 1616390..1617733(-) (rarA) [Glaesserella parasuis strain EHP1804]
MNSLSFDFSADFRPLSARMRPRTLAEYVGQSHLIGEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIANELDAEVERL
SAVTSGIKEIREAIEKAKLNRQSGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRARIYI
LKPLQAVDILKILQNAIADKERGLGNEKLIIQDDVLQLLADYVNGDGRFSLNCLELMCDMAEQLPQGKLLDKALLTEVLG
ERQARFDKGGDRYYDLISALHKSIRGSSPDGALYWYARILTAGGDPLYVARRLLAIASEDIGNADPRAMQFALAAWDCYT
RVGAYEGERAIAQAVIYLAVAPKSNAVYTAFKQAKRLAQEGKDYDVPEHLRNAPTNLMKSLGYGEEYRYAHDEPNAYAAG
ENYFPPELKDTQFYFPTERGMEKQIKEKMAWLKGLDLQSEVQRYNKQ

Nucleotide

• Length: 1344 bp

>NTDB_id=464751 JQC68_RS08055 WP_035520462.1 1616390..1617733(-) (rarA) [Glaesserella parasuis strain EHP1804]
ATGAACAGCTTATCTTTCGATTTTTCTGCGGATTTTCGTCCCCTTTCCGCTCGAATGCGACCACGCACTCTAGCTGAATA
TGTCGGACAATCACACCTGATCGGCGAAGGCAAACCCCTTCGCCGAGCCATTGAAGCAGGACATAGCCACTCAATGATTT
TCTGGGGTCCCCCAGGAACAGGCAAAACCACTCTTGCTGAAATTATCGCAAATGAACTTGATGCCGAAGTTGAACGTCTA
TCAGCTGTTACTAGCGGTATCAAAGAGATCCGAGAAGCCATCGAAAAAGCCAAACTCAACCGACAATCTGGCAGACGCAC
GTTACTTTTTGTTGATGAAGTTCACCGTTTTAACAAAAGCCAACAAGATGCCTTTTTACCCCATATTGAAGACGGCACCA
TTATTTTTATCGGTGCAACCACTGAAAATCCGTCCTTTGAACTGAATAACGCCTTGCTATCAAGGGCAAGGATTTACATT
CTCAAGCCACTACAAGCGGTCGATATTCTAAAAATTTTGCAAAATGCCATTGCAGACAAAGAACGTGGATTAGGCAATGA
AAAGCTCATCATTCAAGATGATGTGCTTCAACTGCTGGCGGACTACGTCAATGGCGACGGACGTTTTTCTCTCAACTGCC
TTGAATTAATGTGCGATATGGCAGAACAATTACCACAAGGAAAATTGCTGGATAAAGCCTTGCTCACCGAAGTGTTGGGC
GAACGCCAAGCCCGTTTTGACAAAGGTGGCGACCGCTATTACGACCTGATTTCCGCCTTACATAAATCCATTCGAGGCTC
TTCCCCTGACGGTGCATTGTACTGGTATGCTCGTATTTTAACCGCTGGAGGCGATCCACTGTATGTTGCTCGCCGACTAC
TTGCGATAGCCTCAGAAGATATAGGCAATGCCGATCCAAGGGCAATGCAATTCGCCCTTGCTGCGTGGGATTGTTATACC
AGAGTAGGGGCTTACGAAGGCGAACGGGCTATCGCCCAAGCGGTGATTTACCTTGCCGTTGCCCCAAAAAGTAATGCCGT
TTACACCGCATTCAAACAAGCCAAACGCCTAGCTCAAGAAGGCAAGGATTACGATGTTCCCGAACATCTGCGAAACGCAC
CGACTAACTTAATGAAATCCTTAGGCTACGGTGAAGAATACCGCTACGCCCACGACGAACCTAACGCCTACGCCGCAGGG
GAAAACTACTTCCCCCCTGAACTAAAAGACACTCAATTCTACTTCCCAACCGAACGTGGAATGGAAAAGCAGATCAAAGA
AAAAATGGCGTGGTTGAAAGGGTTGGATTTGCAGAGTGAGGTGCAGAGGTATAACAAACAATAA

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (266-432)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (19-143)

• AAA C-terminal domain (AAA_assoc_2) (186-265)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.512	91.723	0.362