Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   JQR77_RS08755 Genome accession   NZ_CP069275
Coordinates   1705777..1706070 (-) Length   97 a.a.
NCBI ID   WP_023909978.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain EG007     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1700777..1711070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQR77_RS08715 (JQR77_08725) - 1701179..1701622 (-) 444 WP_011681680.1 hypothetical protein -
  JQR77_RS08720 - 1701696..1702121 (-) 426 WP_014608739.1 CPBP family intramembrane glutamic endopeptidase -
  JQR77_RS08725 - 1702078..1702353 (-) 276 WP_011681681.1 hypothetical protein -
  JQR77_RS08730 (JQR77_08735) - 1702365..1702562 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  JQR77_RS08735 (JQR77_08740) - 1702811..1704004 (-) 1194 WP_084825660.1 acetate kinase -
  JQR77_RS08740 (JQR77_08745) comGH 1704060..1705016 (-) 957 WP_023909974.1 class I SAM-dependent methyltransferase Machinery gene
  JQR77_RS08745 (JQR77_08750) comGG 1705061..1705378 (-) 318 WP_023909975.1 competence type IV pilus minor pilin ComGG Machinery gene
  JQR77_RS08750 (JQR77_08755) comGF 1705356..1705793 (-) 438 WP_084825661.1 competence type IV pilus minor pilin ComGF Machinery gene
  JQR77_RS08755 (JQR77_08760) comGE 1705777..1706070 (-) 294 WP_023909978.1 competence type IV pilus minor pilin ComGE Machinery gene
  JQR77_RS08760 (JQR77_08765) comGD 1706042..1706470 (-) 429 WP_171815055.1 competence type IV pilus minor pilin ComGD Machinery gene
  JQR77_RS08765 (JQR77_08770) comGC 1706430..1706756 (-) 327 WP_023909980.1 competence type IV pilus major pilin ComGC Machinery gene
  JQR77_RS08770 (JQR77_08775) comGB 1706753..1707853 (-) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  JQR77_RS08775 (JQR77_08780) comGA 1707735..1708676 (-) 942 WP_014622005.1 competence type IV pilus ATPase ComGA Machinery gene
  JQR77_RS08780 (JQR77_08785) - 1708757..1709119 (-) 363 WP_023909982.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10858.77 Da        Isoelectric Point: 10.4561

>NTDB_id=464701 JQR77_RS08755 WP_023909978.1 1705777..1706070(-) (comGE) [Streptococcus thermophilus strain EG007]
MVNIKRRSLRGYILIESLIAMAVLVLVSSLILEQINTNRRLMADNLHQQEVLSVATMAVQTKQDQLTLNGIAVTVKRSQQ
GITVYESGKEIIHVSKQ

Nucleotide


Download         Length: 294 bp        

>NTDB_id=464701 JQR77_RS08755 WP_023909978.1 1705777..1706070(-) (comGE) [Streptococcus thermophilus strain EG007]
GTGGTAAATATAAAAAGACGATCTCTTAGAGGTTATATTCTTATTGAAAGCCTGATAGCTATGGCTGTTTTAGTACTTGT
CAGCAGTCTGATATTGGAACAAATTAATACCAACCGCAGACTAATGGCTGATAATCTCCATCAACAAGAGGTCTTGAGTG
TGGCAACAATGGCAGTTCAGACCAAGCAAGACCAGTTAACGCTGAATGGCATAGCGGTGACAGTTAAACGTAGCCAGCAA
GGTATCACGGTTTATGAATCGGGAAAGGAGATTATTCATGTATCTAAGCAGTAA

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

42.268

100

0.423
  comGE Streptococcus mutans UA159

42.268

100

0.423
  comGE Lactococcus lactis subsp. cremoris KW2

37.113

100

0.371