Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   HYE74_RS04725 Genome accession   NZ_CP058594
Coordinates   1057601..1059415 (+) Length   604 a.a.
NCBI ID   WP_179234330.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain ASRS217     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1052601..1064415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYE74_RS04705 - 1053431..1054372 (+) 942 WP_218832522.1 ABC transporter ATP-binding protein -
  HYE74_RS04710 spxA 1054651..1055046 (+) 396 WP_013858789.1 transcriptional regulator SpxA -
  HYE74_RS04715 mecA 1055409..1056068 (+) 660 WP_013858790.1 adaptor protein MecA -
  HYE74_RS04720 - 1056309..1057535 (+) 1227 WP_237682156.1 competence protein CoiA -
  HYE74_RS04725 pepF 1057601..1059415 (+) 1815 WP_179234330.1 oligoendopeptidase F Regulator
  HYE74_RS04730 - 1059807..1059998 (-) 192 WP_017553961.1 hypothetical protein -
  HYE74_RS04735 - 1060289..1061146 (-) 858 WP_272955372.1 ClpXP adapter SpxH family protein -
  HYE74_RS04740 - 1061143..1061544 (-) 402 WP_014095722.1 globin -
  HYE74_RS04745 - 1063472..1064254 (-) 783 WP_179234331.1 lytic transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69506.14 Da        Isoelectric Point: 4.9434

>NTDB_id=464462 HYE74_RS04725 WP_179234330.1 1057601..1059415(+) (pepF) [Heyndrickxia coagulans strain ASRS217]
MENGKKVHALPSRDEVREALTWRLEDIFPSDDDWNKEYEAVKEKLADAASYQGKLGESAEQLYHALKFQDEVTERFGKLY
TYAHMRYDQDTTNAFYQGIDSKAKSLAAQVGSAFAFVVPEILSIEEAKLNEFLEAYEPLQLYRHALEEINEMRPHILSKE
EEALLAQVSEVLNTSSTTFGMLNNADLEFPTVIDENGNEVQITHGRFTRLLESKDRRVRKEAFQKLYATYKKFTNTFAST
LSGQVKKNNVVAQIRHYRSAREAALSANHIPEKVYDQLVETVNKHLGLLQRYVALRKKVLQLDEVHMYDLYTPLVQDADM
EVTYEKAKEIVLDGLHPLGEEYRSILQEAFENRWIDVVENKGKQSGAYSSGVYGTNPYILLNWQDNIDNVFTLAHELGHS
VHSYYTRKNQPYPYGDYSIFVAEVASTCNEALLNDYLLKTIKDEKQRIYLLNHYLEGFRGTVFRQTMFAEFEHLIHQKAQ
HGEALTAELLTDEYYKLNQKYFGTDIAIDQEIGLEWARIPHFYYDYYVYQYATGFSAATALSKQILEEGEPAVKRYIGYL
SAGSSEYPIEVLKKAGVDMASPQPVEDALKVFEEKLTEMENLLG

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=464462 HYE74_RS04725 WP_179234330.1 1057601..1059415(+) (pepF) [Heyndrickxia coagulans strain ASRS217]
ATGGAAAACGGAAAAAAAGTACACGCGTTGCCAAGCAGGGACGAGGTTCGTGAAGCATTAACCTGGAGGCTTGAGGATAT
TTTTCCAAGCGACGATGACTGGAATAAAGAATACGAAGCCGTAAAAGAAAAGCTGGCCGATGCCGCTTCTTATCAGGGGA
AACTTGGCGAAAGCGCTGAACAGCTTTATCATGCGCTAAAGTTCCAGGATGAAGTGACAGAAAGGTTCGGCAAGCTGTAT
ACATACGCGCATATGCGTTATGACCAGGATACAACGAATGCCTTTTATCAGGGGATAGACAGCAAAGCGAAAAGTCTTGC
CGCCCAGGTTGGGAGCGCGTTTGCGTTTGTGGTGCCGGAAATTCTTTCGATTGAAGAAGCGAAACTGAACGAATTCCTGG
AAGCTTATGAGCCGCTGCAATTGTACCGGCACGCATTGGAAGAAATCAATGAGATGCGCCCGCATATTTTATCGAAGGAA
GAAGAAGCATTGCTCGCACAGGTTTCAGAAGTGTTGAATACTTCCAGCACCACTTTCGGCATGCTTAATAATGCCGACCT
TGAGTTCCCAACTGTGATCGATGAAAACGGCAATGAAGTGCAGATCACGCACGGCCGTTTTACACGCCTGCTGGAAAGCA
AAGACCGCCGCGTGCGCAAAGAGGCATTCCAGAAATTGTATGCGACCTACAAAAAATTCACCAACACGTTTGCGAGCACG
CTCAGCGGCCAGGTGAAAAAGAACAATGTTGTTGCGCAAATCCGCCATTACCGTTCGGCGCGTGAAGCTGCCCTTTCGGC
AAACCATATTCCTGAAAAAGTGTACGACCAGCTTGTGGAAACGGTGAACAAGCATCTCGGTTTGCTGCAGCGGTATGTTG
CATTGCGCAAAAAAGTGCTGCAGCTTGATGAAGTGCATATGTACGATCTGTATACGCCACTTGTCCAGGACGCCGATATG
GAAGTGACATATGAAAAAGCGAAAGAGATCGTGCTCGATGGCCTCCATCCGCTCGGCGAGGAATACCGGAGCATTTTGCA
GGAGGCGTTTGAAAACCGCTGGATTGACGTGGTGGAGAACAAAGGCAAACAGAGCGGAGCCTATTCTTCAGGCGTTTATG
GGACCAATCCGTACATTTTGCTGAACTGGCAGGACAATATTGACAATGTATTCACTCTCGCGCATGAGCTCGGCCACAGC
GTCCACAGCTATTACACGCGGAAGAACCAGCCGTATCCGTACGGGGATTATTCCATTTTTGTCGCGGAAGTGGCTTCCAC
GTGCAATGAGGCGCTGTTGAATGACTATCTGTTAAAAACGATCAAAGACGAGAAACAGCGGATTTACTTATTGAATCATT
ATCTGGAAGGTTTCCGCGGGACGGTCTTCCGCCAGACGATGTTTGCCGAATTTGAGCATCTGATCCATCAAAAAGCGCAA
CATGGCGAAGCGCTGACAGCGGAACTTTTGACAGATGAGTATTATAAGCTGAACCAAAAATACTTTGGCACGGATATCGC
CATCGATCAGGAAATCGGGCTTGAGTGGGCACGCATTCCGCATTTTTATTACGATTATTATGTATATCAGTATGCGACCG
GCTTCAGCGCCGCGACCGCGTTAAGCAAACAAATCCTCGAAGAAGGGGAACCGGCTGTCAAACGCTACATCGGCTATTTA
AGCGCCGGCAGCTCGGAATATCCGATTGAAGTATTGAAAAAAGCAGGCGTCGATATGGCGTCGCCCCAGCCGGTCGAAGA
TGCGTTAAAAGTATTTGAAGAAAAATTAACGGAAATGGAAAACTTGCTTGGATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(210-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.676

98.013

0.497