Detailed information NTG0046434

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: SAA6008_RS08390
• Genome accession: NC_017341
• Coordinates: 1697030..1699504 (-)
• Length: 824 a.a.
• NCBI ID: WP_001283301.1
• Uniprot ID: -
• Organism: Staphylococcus aureus subsp. aureus str. JKD6008
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1692030..1704504

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SAA6008_RS08365 (SAA6008_01584)	-	1692056..1692694 (-)	639	WP_000342266.1	methyltransferase domain-containing protein	-
SAA6008_RS08370 (SAA6008_01585)	-	1692979..1693287 (-)	309	WP_000134779.1	DUF1292 domain-containing protein	-
SAA6008_RS08375 (SAA6008_01586)	ruvX	1693302..1693730 (-)	429	WP_000939059.1	Holliday junction resolvase RuvX	-
SAA6008_RS08380 (SAA6008_01587)	-	1693734..1693994 (-)	261	WP_000426912.1	IreB family regulatory phosphoprotein	-
SAA6008_RS08385 (SAA6008_01588)	alaS	1694057..1696687 (-)	2631	WP_000734064.1	alanine--tRNA ligase	-
SAA6008_RS08390 (SAA6008_01589)	recD2	1697030..1699504 (-)	2475	WP_001283301.1	ATP-dependent RecD-like DNA helicase	Machinery gene
SAA6008_RS08395 (SAA6008_01590)	-	1699506..1700174 (-)	669	WP_000567028.1	tetratricopeptide repeat protein	-
SAA6008_RS08400 (SAA6008_01591)	mnmA	1700636..1701754 (-)	1119	WP_000066097.1	tRNA 2-thiouridine(34) synthase MnmA	-
SAA6008_RS08405 (SAA6008_01592)	-	1701755..1702897 (-)	1143	WP_000409167.1	cysteine desulfurase family protein	-
SAA6008_RS08410 (SAA6008_01593)	-	1703209..1704222 (+)	1014	WP_000985885.1	LLM class flavin-dependent oxidoreductase	-

Sequence

Protein

• Length: 824 a.a.
• Molecular weight: 92919.72 Da
• Isoelectric Point: 4.4945

>NTDB_id=46434 SAA6008_RS08390 WP_001283301.1 1697030..1699504(-) (recD2) [Staphylococcus aureus subsp. aureus str. JKD6008]
MSDPTLFDYSMIKGTVEAILFQNSDNFYTVLKVDTIETNEDFDTMPTVVGFLPNIVEGDVYTFKGQVVDHPRYGKQLKAE
TFEKEMPQTKEAIISYLSSDLFKGVGKKTAQNIVNTLGDNAINDILDDHSVLEKVSGLSKKKQKQIAEQISANQESEKIM
IRLHDLGFGPKLSMAIYQFYLGDTLTILDRNPYQLIYDIKGIGFNKADQLARNIGIAYNDNERLKAALLYTLEECIKQGH
TYLPINVVIDLTVDVLNYQDEEVIEPEKLDEMLQYLNEEKRLIIDNEQVAIPSLYYSEIKSVQNLFRIKTHTNKLTEIEQ
SDLQMHIGEIEDANQVNYAASQKEALQTAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYVNDDYPVVLAA
PTGRASKRLQESTGLEAMTIHRLIGWNQDTKPEDILENEINARLIIIDEMSMVDTWLFHQFLSAVPLDAQLIFVGDEDQL
PSVGPGQVFKDLIESKAIPRVNLTEVYRQQDGSSIIELAHRMKLGQKIDITQRFHDRSFINCQANQIPTVVEKVVTSAVN
KGYTMADIQVLAPMYKGNAGIKRLNQVLQDILNPKKKDTREIEFGDVVFRKGDKVLQLVNRPNDNIFNGDIGVIVGIFWA
KENALNKDVLVVDFEGNEITFTKQDMMELTHAYCTSIHKSQGSEFPIVIMPIVKQYFRMLQRPILYTGLTRAKTSLVLLG
DPEAFDIGLKTNGQARLTQLCTLLKNYFNSEDEEMLENTATNDTGASQTTIDDQVEAPMSSNDSEEVMSDSTKTDTNVLT
EATMFKIDPMINMGEITPYDFIER

Nucleotide

• Length: 2475 bp

>NTDB_id=46434 SAA6008_RS08390 WP_001283301.1 1697030..1699504(-) (recD2) [Staphylococcus aureus subsp. aureus str. JKD6008]
ATGTCAGACCCTACACTATTTGATTATTCAATGATCAAAGGTACTGTTGAAGCGATATTGTTTCAAAACAGTGATAATTT
TTATACAGTGCTTAAAGTAGATACTATTGAAACAAATGAAGACTTTGATACAATGCCAACTGTTGTAGGGTTTCTTCCGA
ATATTGTTGAAGGCGATGTCTACACATTTAAAGGGCAAGTTGTTGATCATCCACGTTATGGTAAACAATTAAAAGCAGAG
ACTTTTGAAAAAGAAATGCCACAAACGAAAGAAGCAATTATAAGTTATTTATCTAGTGATTTGTTTAAAGGTGTAGGTAA
AAAGACAGCTCAAAATATTGTTAATACATTAGGTGACAATGCGATAAATGATATATTAGATGACCATTCAGTGCTAGAAA
AAGTTTCGGGATTATCTAAAAAGAAACAGAAACAAATTGCAGAACAAATTTCAGCAAATCAAGAATCTGAAAAAATAATG
ATTCGTTTACATGATTTAGGGTTTGGTCCTAAACTTTCAATGGCAATTTATCAGTTTTATCTCGGCGATACACTGACTAT
TTTAGATCGAAATCCATATCAATTGATTTATGATATTAAAGGTATTGGTTTTAATAAAGCAGATCAACTTGCTAGAAATA
TTGGTATCGCTTATAACGATAATGAACGATTAAAAGCTGCGTTGCTCTATACGTTAGAAGAATGTATTAAACAGGGACAT
ACATATTTGCCTATCAATGTTGTTATAGATTTAACGGTTGATGTATTAAATTATCAAGATGAAGAGGTCATCGAACCTGA
AAAATTAGACGAAATGTTGCAATACTTAAATGAGGAAAAACGACTAATTATTGACAATGAACAAGTTGCAATTCCAAGTT
TGTATTATTCTGAAATCAAAAGTGTTCAAAACTTATTCAGAATAAAGACGCATACAAATAAACTTACAGAAATTGAACAG
TCAGATTTACAAATGCATATTGGTGAAATAGAAGATGCGAATCAAGTGAACTATGCAGCTTCACAAAAAGAAGCTTTGCA
AACGGCTATCAATTCTAAGGTGATGCTATTAACCGGTGGACCGGGAACAGGAAAAACGACAGTAATTAAAGGTATTGTTG
AATTATATGCTGAGATTCATGGCTTATCATTAGATTATGATGATTATGTCAATGATGATTATCCAGTTGTATTAGCAGCG
CCAACAGGAAGAGCGTCTAAGAGACTACAAGAGTCAACTGGATTAGAAGCAATGACGATTCATCGTTTAATAGGTTGGAA
TCAAGACACAAAGCCAGAGGATATATTAGAAAATGAAATAAACGCACGACTCATAATCATTGATGAGATGTCTATGGTAG
ATACTTGGTTGTTCCACCAATTTTTAAGTGCAGTTCCTTTAGATGCACAATTGATATTTGTAGGTGATGAGGACCAATTG
CCTTCTGTAGGTCCTGGTCAAGTATTTAAAGATTTAATTGAATCGAAAGCTATACCACGAGTAAATCTGACTGAAGTATA
TCGTCAACAAGATGGTTCAAGCATTATAGAATTAGCACATCGAATGAAGTTGGGTCAGAAAATTGATATTACACAGCGTT
TTCATGATAGAAGTTTTATTAACTGTCAGGCAAACCAAATACCAACAGTTGTTGAGAAGGTAGTTACTAGTGCTGTTAAT
AAAGGGTATACTATGGCTGATATTCAAGTGCTTGCACCAATGTATAAAGGAAATGCCGGTATTAAACGTTTAAATCAAGT
TTTACAAGATATTTTAAACCCTAAAAAGAAAGACACACGAGAAATTGAGTTTGGTGATGTAGTCTTTAGAAAAGGTGACA
AAGTATTACAACTTGTTAATAGGCCAAATGATAACATATTCAATGGTGACATAGGAGTTATTGTTGGTATTTTTTGGGCG
AAAGAAAATGCCCTTAATAAAGATGTACTTGTTGTGGATTTTGAAGGTAATGAAATTACATTTACGAAACAAGATATGAT
GGAATTAACACATGCTTATTGTACATCAATCCATAAATCACAAGGTTCAGAATTTCCTATTGTTATCATGCCTATTGTTA
AACAGTATTTTAGAATGTTACAAAGACCGATATTATATACTGGTTTAACTAGAGCGAAAACGAGTTTAGTTTTACTTGGT
GATCCGGAAGCATTTGATATTGGATTGAAAACAAATGGTCAAGCGCGTTTAACACAATTATGTACATTGTTGAAAAATTA
TTTTAATTCAGAAGATGAAGAAATGCTGGAAAACACAGCAACTAATGATACAGGAGCTTCACAAACGACAATAGATGATC
AAGTAGAAGCGCCAATGTCATCGAATGATAGTGAAGAAGTTATGTCTGATTCAACAAAAACAGATACAAATGTATTAACG
GAAGCTACAATGTTTAAAATTGACCCAATGATTAATATGGGAGAAATCACGCCGTATGACTTTATAGAACGTTGA

Domains

Predicted by InterproScan.

• UvrD-like helicase C-terminal domain (UvrD_C_2) (671-719)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (584-654)

• AAA domain (AAA_30) (338-543)

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	52.988	91.383	0.484