Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   IS492_RS05160 Genome accession   NZ_CP069177
Coordinates   1093576..1094100 (+) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain Z154     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1088576..1099100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS492_RS05140 (IS492_05145) - 1088646..1091114 (-) 2469 WP_003114576.1 penicillin-binding protein 1A -
  IS492_RS05145 (IS492_05150) pilM 1091299..1092363 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  IS492_RS05150 (IS492_05155) pilN 1092363..1092959 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  IS492_RS05155 (IS492_05160) pilO 1092956..1093579 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  IS492_RS05160 (IS492_05165) comL/pilP 1093576..1094100 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  IS492_RS05165 (IS492_05170) pilQ 1094154..1096298 (+) 2145 WP_012614629.1 type 4a pilus secretin PilQ Machinery gene
  IS492_RS05170 (IS492_05175) aroK 1096310..1096828 (+) 519 WP_003095833.1 shikimate kinase AroK -
  IS492_RS05175 (IS492_05180) aroB 1096878..1097984 (+) 1107 WP_003107839.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=464279 IS492_RS05160 WP_003095836.1 1093576..1094100(+) (comL/pilP) [Pseudomonas aeruginosa strain Z154]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=464279 IS492_RS05160 WP_003095836.1 1093576..1094100(+) (comL/pilP) [Pseudomonas aeruginosa strain Z154]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGAGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362