Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   JNE32_RS07985 Genome accession   NZ_CP068982
Coordinates   1521515..1521964 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain pb2441     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1516515..1526964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE32_RS07945 (JNE32_07900) ctaE 1516531..1517154 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  JNE32_RS07950 (JNE32_07905) ctaF 1517157..1517489 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  JNE32_RS07955 (JNE32_07910) ctaG 1517517..1518410 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  JNE32_RS07960 (JNE32_07915) ylbA 1518442..1518804 (-) 363 WP_003232238.1 YugN family protein -
  JNE32_RS07965 (JNE32_07920) ylbB 1518944..1519390 (+) 447 WP_003221362.1 CBS domain-containing protein -
  JNE32_RS07970 (JNE32_07925) ylbC 1519474..1520514 (+) 1041 WP_003245434.1 CAP domain-containing protein -
  JNE32_RS07975 (JNE32_07930) ylbD 1520746..1521144 (+) 399 WP_003232233.1 YlbD family protein -
  JNE32_RS07980 (JNE32_07935) ylbE 1521160..1521399 (+) 240 WP_003232231.1 YlbE-like family protein -
  JNE32_RS07985 (JNE32_07940) ylbF 1521515..1521964 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  JNE32_RS07990 (JNE32_07945) ylbG 1522019..1522291 (+) 273 WP_015715839.1 YlbG family protein -
  JNE32_RS07995 (JNE32_07950) rsmD 1522614..1523168 (+) 555 WP_029726518.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  JNE32_RS08000 (JNE32_07955) coaD 1523173..1523658 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  JNE32_RS08005 (JNE32_07960) spoVV 1523669..1524895 (-) 1227 WP_250354607.1 dipicolinic acid transporter SpoVV -
  JNE32_RS08010 (JNE32_07965) ylbK 1525076..1525858 (+) 783 WP_003232221.1 patatin family protein -
  JNE32_RS08015 (JNE32_07970) sepM 1525860..1526885 (+) 1026 WP_029726516.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=463998 JNE32_RS07985 WP_003221370.1 1521515..1521964(+) (ylbF) [Bacillus subtilis strain pb2441]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=463998 JNE32_RS07985 WP_003221370.1 1521515..1521964(+) (ylbF) [Bacillus subtilis strain pb2441]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1