Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   HXP32_RS02115 Genome accession   NZ_CP058340
Coordinates   428962..429477 (+) Length   171 a.a.
NCBI ID   WP_002783936.1    Uniprot ID   A0A5T1ZSK1
Organism   Campylobacter coli strain 20A420     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 423962..434477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXP32_RS02090 (HXP32_02095) - 424418..424756 (+) 339 WP_002777761.1 hypothetical protein -
  HXP32_RS02095 (HXP32_02100) - 424765..425490 (+) 726 WP_002780542.1 phosphatidate cytidylyltransferase -
  HXP32_RS02100 (HXP32_02105) dxr 425487..426563 (+) 1077 WP_002831259.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  HXP32_RS02105 (HXP32_02110) - 426560..427954 (+) 1395 WP_002831260.1 M99 family carboxypeptidase catalytic domain-containing protein -
  HXP32_RS02110 (HXP32_02115) tsaD 427951..428958 (+) 1008 WP_002785735.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  HXP32_RS02115 (HXP32_02120) ctsG 428962..429477 (+) 516 WP_002783936.1 type II secretion system protein Machinery gene
  HXP32_RS02120 (HXP32_02125) - 429477..430720 (+) 1244 Protein_418 DUF2920 family protein -
  HXP32_RS08915 (HXP32_02130) - 430732..432554 (+) 1823 Protein_419 6-hydroxymethylpterin diphosphokinase MptE-like protein -
  HXP32_RS02130 (HXP32_02135) - 432551..434375 (+) 1825 Protein_420 6-hydroxymethylpterin diphosphokinase MptE-like protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18969.97 Da        Isoelectric Point: 8.4861

>NTDB_id=463911 HXP32_RS02115 WP_002783936.1 428962..429477(+) (ctsG) [Campylobacter coli strain 20A420]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYALKNSHLSTMNFMSNVSGVENVDLNN
FIGIKEVNFRVGEDKECIKLIFIDRNDFVLMGISSNEASKNAIINIANNPKQEFQNLDFTSNSKNKACVALSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=463911 HXP32_RS02115 WP_002783936.1 428962..429477(+) (ctsG) [Campylobacter coli strain 20A420]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATCT
ATGCCTTAAAAAATAGTCATTTAAGCACTATGAATTTTATGAGCAATGTAAGTGGAGTAGAAAATGTCGATCTTAACAAT
TTTATAGGCATAAAAGAAGTAAATTTTAGGGTCGGAGAGGATAAAGAGTGTATAAAACTGATTTTCATCGATAGAAATGA
TTTTGTACTGATGGGAATTTCTAGTAATGAAGCAAGTAAAAATGCCATAATCAATATAGCCAATAACCCCAAACAAGAAT
TTCAAAACTTAGATTTTACAAGCAATTCAAAAAATAAAGCTTGCGTGGCACTAAGTAAAAATGAGAATTTTAAAAATTTA
GCCAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1ZSK1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

77.778

100

0.778