Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JNN35_RS02425 Genome accession   NZ_CP068828
Coordinates   520007..520474 (-) Length   155 a.a.
NCBI ID   WP_000338336.1    Uniprot ID   -
Organism   Escherichia coli strain RIVM_C030443     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 515007..525474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN35_RS02400 (JNN35_02400) rpsG 515148..515618 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  JNN35_RS02405 (JNN35_02405) fusA 515715..517829 (+) 2115 WP_000124703.1 elongation factor G -
  JNN35_RS02410 (JNN35_02410) tuf 517900..519084 (+) 1185 WP_000031783.1 elongation factor Tu -
  JNN35_RS02415 (JNN35_02415) bfd 519267..519461 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  JNN35_RS02420 (JNN35_02420) bfr 519534..520010 (+) 477 WP_000675515.1 bacterioferritin -
  JNN35_RS02425 (JNN35_02425) pilD 520007..520474 (-) 468 WP_000338336.1 A24 family peptidase Machinery gene
  JNN35_RS02430 (JNN35_02430) rpsJ 520853..521164 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  JNN35_RS02435 (JNN35_02435) rplC 521197..521826 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  JNN35_RS02440 (JNN35_02440) rplD 521837..522442 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  JNN35_RS02445 (JNN35_02445) rplW 522439..522741 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  JNN35_RS02450 (JNN35_02450) rplB 522759..523580 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  JNN35_RS02455 (JNN35_02455) rpsS 523597..523875 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  JNN35_RS02460 (JNN35_02460) rplV 523890..524222 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  JNN35_RS02465 (JNN35_02465) rpsC 524240..524941 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  JNN35_RS02470 (JNN35_02470) rplP 524954..525364 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17034.17 Da        Isoelectric Point: 8.1255

>NTDB_id=463696 JNN35_RS02425 WP_000338336.1 520007..520474(-) (pilD) [Escherichia coli strain RIVM_C030443]
MDAALPFLILYACLSTLLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=463696 JNN35_RS02425 WP_000338336.1 520007..520474(-) (pilD) [Escherichia coli strain RIVM_C030443]
ATGGACGCTGCCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAACCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGGTTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGCCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTTTGCTTATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGTCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368