Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   VY92_RS09135 Genome accession   NZ_CP058307
Coordinates   1883721..1884242 (+) Length   173 a.a.
NCBI ID   WP_017806950.1    Uniprot ID   A0A0F5ER87
Organism   Avibacterium paragallinarum strain AVPG2015     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1878721..1889242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VY92_RS09100 (VY92_009105) tolQ 1878991..1879674 (+) 684 WP_035688447.1 protein TolQ -
  VY92_RS09105 (VY92_009110) tolR 1879726..1880148 (+) 423 WP_035688444.1 colicin uptake protein TolR -
  VY92_RS09110 (VY92_009115) tolA 1880165..1881379 (+) 1215 WP_035688442.1 cell envelope integrity protein TolA -
  VY92_RS09115 (VY92_009120) tolB 1881431..1882720 (+) 1290 WP_233570698.1 Tol-Pal system beta propeller repeat protein TolB -
  VY92_RS09120 (VY92_009125) pal 1882731..1883183 (+) 453 WP_017806949.1 peptidoglycan-associated lipoprotein Pal -
  VY92_RS09135 (VY92_009140) comN 1883721..1884242 (+) 522 WP_017806950.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  VY92_RS09140 (VY92_009145) - 1884243..1884962 (+) 720 WP_035688438.1 type II secretion system protein J -
  VY92_RS09145 (VY92_009150) - 1884964..1885629 (+) 666 WP_051128113.1 DUF2572 family protein -
  VY92_RS09150 (VY92_009155) - 1885610..1885915 (+) 306 WP_035688436.1 DUF5374 domain-containing protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 20049.50 Da        Isoelectric Point: 8.4767

>NTDB_id=463642 VY92_RS09135 WP_017806950.1 1883721..1884242(+) (comN) [Avibacterium paragallinarum strain AVPG2015]
MNVKGFTLLESLISLLILSILLLMALPIWQQNHNEAVLEKEQHRLYLFLRYIQSRVENSNDIWFLVANRDLLSKKWCISA
QIKQDKICNCLQPQYCSNELMVNIYTPMFPQETMIISKNYYPKEMARLSGIRNTVQSDCFLLQAGDKRTLFSFFNVGSLK
LKDISSLSACGDK

Nucleotide


Download         Length: 522 bp        

>NTDB_id=463642 VY92_RS09135 WP_017806950.1 1883721..1884242(+) (comN) [Avibacterium paragallinarum strain AVPG2015]
ATGAATGTAAAAGGTTTTACATTGCTTGAATCATTGATTTCATTATTAATTTTAAGCATATTACTATTAATGGCACTGCC
TATTTGGCAACAAAATCATAATGAAGCAGTGCTTGAAAAAGAGCAGCATAGGCTTTATCTTTTTTTACGTTATATTCAAA
GTAGAGTCGAAAACTCTAATGACATATGGTTTTTAGTCGCAAATCGTGATCTCCTTAGCAAGAAATGGTGTATTTCTGCT
CAAATAAAACAAGATAAAATCTGTAATTGTTTACAGCCCCAATATTGTTCCAATGAATTAATGGTTAATATTTATACGCC
GATGTTCCCGCAAGAAACAATGATTATAAGTAAAAACTATTATCCTAAAGAAATGGCAAGACTGAGCGGTATTCGGAATA
CCGTGCAATCAGATTGTTTCCTTTTGCAAGCAGGGGATAAACGAACGCTTTTTTCATTTTTTAATGTAGGAAGTTTAAAA
TTAAAAGATATCTCTTCTTTGAGTGCTTGTGGAGATAAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F5ER87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

51.786

97.11

0.503